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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:133.1 nTPM
HPA Brain:140.7 nTPM
GTEx:133.1 nTPM
FANTOM5:266.4 Scaled Tags Per Million
Pig:33.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 118.4
2816 Male, age 47, midline 129.7
2194 Female, age 79, both hemispheres 123.2
1981 Female, age 72, midline 120.6
2048 Male, age 55, midline 111.3
2565 Male, age 75, midline 107.3
Cervical spinal cord, dorsal horn
nTPM: 137.8
2296 Male, age 66, both hemispheres 256.3
2173 Female, age 72, unknown 182.3
2069 Male, age 47, both hemispheres 130.0
1877 Male, age 55, unknown 109.3
2721 Male, age 90, both hemispheres 76.3
2297 Male, age 75, both hemispheres 72.7
Cervical spinal cord, ventral horn
nTPM: 140.7
2480 Male, age 75, both hemispheres 159.4
2068 Male, age 55, unknown 152.2
2820 Female, age 79, both hemispheres 152.1
2809 Male, age 90, both hemispheres 131.4
2098 Female, age 72, unknown 129.9
2295 Male, age 66, both hemispheres 119.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 133.1
Samples: 159

Max nTPM: 279.9
Min nTPM: 32.5
Std nTPM: 49.2
Median nTPM: 132.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 279.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 242.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 239.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 237.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 233.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 233.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 223.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 219.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 216.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 215.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 210.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 210.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 210.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 209.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 209.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 206.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 205.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 202.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 202.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 194.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 192.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 189.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 185.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 185.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 182.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 180.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 178.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 177.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 177.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 176.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 175.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 175.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 174.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 173.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 173.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 171.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 169.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 169.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 168.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 168.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 164.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 163.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 162.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 161.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 161.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 158.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 157.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 157.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 156.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 154.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 152.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 151.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 150.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 150.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 148.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 147.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 147.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 144.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 144.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 143.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 143.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 142.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 142.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 141.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 141.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 140.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 140.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 140.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 138.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 137.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 136.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 136.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 136.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 135.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 135.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 133.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 133.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 133.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 132.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 132.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 131.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 130.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 129.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 128.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 128.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 127.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 126.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 125.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 125.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 124.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 124.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 124.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 122.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 122.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 120.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 119.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 118.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 118.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 115.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 114.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 113.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 112.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 112.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 111.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 110.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 110.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 109.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 107.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 107.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 107.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 106.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 104.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 104.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 103.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 103.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 102.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 101.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 99.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 97.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 96.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 96.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 96.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 94.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 93.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 91.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 91.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 89.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 88.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 88.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 88.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 87.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 85.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 84.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 82.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 82.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 81.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 80.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 75.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 75.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 73.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 73.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 73.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 69.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 69.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 67.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 66.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 65.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 61.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 59.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 57.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 56.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 52.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 48.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 47.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 44.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 43.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 42.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 37.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 32.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

266.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 266.4
FF:10181-103D1 60 years, female 379.5
FF:10159-103A6 76 years, female 153.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 30.2
Samples: 4

Max nTPM: 35.6
Min nTPM: 25.5
Sample A Female 35.6
Sample B Female 27.3
Sample C Male 25.5
Sample D Male 32.3
Ventral spinal cord
nTPM: 33.4
Samples: 4

Max nTPM: 39.2
Min nTPM: 30.2
Sample A Female 39.2
Sample B Female 30.2
Sample C Male 30.9
Sample D Male 33.1

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