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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1072.7 nTPM
GTEx:1072.7 nTPM
FANTOM5:7.3 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA012014Antibody CAB000132
Squamous epithelial cells LowLow



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1072.7
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1072.7
Samples: 156

Max nTPM: 17970.7
Min nTPM: 31.0
Std nTPM: 2227.5
Median nTPM: 125.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 17970.7
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 9661.3
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 9631.9
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 8572.0
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 6785.8
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 6565.7
GTEX-14PKU-1326-SM-6871B 40-49 years, female 5819.3
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 5181.4
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 4342.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4228.0
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 4174.1
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 3615.7
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 3527.4
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 3486.1
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 3433.6
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 3111.0
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 3100.5
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2923.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 2641.0
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 2632.5
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2625.7
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2624.8
GTEX-11I78-2026-SM-5987C 50-59 years, female 2599.6
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 2526.2
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2497.3
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 2273.2
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1868.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1847.0
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1826.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1814.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1784.6
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1571.9
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1215.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1174.3
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1093.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1037.1
GTEX-1C475-0526-SM-793AC 40-49 years, female 985.3
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 868.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 866.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 866.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 849.8
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 842.8
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 800.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 769.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 761.3
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 745.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 725.7
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 712.8
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 676.9
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 669.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 633.4
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 616.3
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 604.2
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 512.6
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 498.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 497.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 461.2
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 460.2
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 424.5
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 421.5
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 412.4
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 369.9
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 349.8
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 346.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 309.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 276.4
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 244.4
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 243.3
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 240.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 200.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 194.0
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 186.1
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 161.5
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 149.2
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 147.4
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 138.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 129.3
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 127.3
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 123.6
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 118.5
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 118.4
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 114.7
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 109.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 109.0
GTEX-QCQG-1226-SM-48U23 50-59 years, female 108.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 108.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 105.3
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 104.2
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 95.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 94.6
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 94.5
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 94.5
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 94.0
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 92.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 83.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 82.8
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 82.0
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 74.8
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 73.8
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 73.1
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 72.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 69.6
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 69.1
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 68.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 67.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 67.1
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 67.1
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 66.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 65.8
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 65.5
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 65.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 63.4
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 62.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 61.5
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 60.7
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 58.2
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 57.6
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 55.7
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 55.6
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 55.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 54.8
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 54.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 53.5
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 53.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 53.3
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 52.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 52.3
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 51.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 51.4
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 51.0
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 49.9
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 49.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 48.4
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 48.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 47.6
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 47.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 47.4
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 46.7
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 45.9
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 45.2
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 45.0
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 44.2
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 43.3
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 42.0
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 41.9
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 41.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 40.8
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 38.9
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 38.3
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 38.1
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 37.5
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 36.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 36.3
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 36.0
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 34.3
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 31.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

7.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 7.3
FF:10204-103F6 68 years, female 7.3

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