HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi 		81.220
RNA expressioni
Consensus:5.2 nTPM
HPA Brain:77.0 nTPM
GTEx:5.2 nTPM
FANTOM5:58.0 Scaled Tags Per Million
Mouse:41.7 nTPM
Allen mouse:4.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA015858Antibody HPA029579
Glial cells LowNot detected
Neuronal cells Not detectedLow





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody CAB079012
Hippocampal formation mean intensity 81.220
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 47.161
Molecular layer of the dentate gyrus 41.346
Granular dentate gyrus 34.404
CA1 - oriens layer 47.007
CA1 - pyramidal layer 27.289
CA1 - radiatum layer 50.290
CA2 - oriens layer 32.966
CA2 - pyramidal layer 20.313
CA2 - radiatum layer 39.812
CA3 - oriens layer 47.691
CA3 - pyramidal layer 30.679
CA3 - radiatum layer 50.609
Stratum lucidum 56.405
Lacunosum moleculare 32.598
Subiculum 80.000

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 77.0
Sample id Sample description nTPM
Hippocampus
nTPM: 65.3
2148 Female, age 91, left hemisphere 85.5
2621 Female, age 67, right hemisphere 77.9
1898 Male, age 80, left hemisphere 74.4
1855 Male, age 76, left hemisphere 67.6
1911 Female, age 85, right hemisphere 46.8
2529 Female, age 94, left hemisphere 39.8
Dentate gyrus
nTPM: 70.9
1927 Female, age 91, both hemispheres 98.1
2531 Female, age 67, both hemispheres 84.4
2246 Female, age 85, both hemispheres 69.0
2010 Male, age 76, both hemispheres 63.3
2530 Female, age 94, left hemisphere 60.7
2528 Male, age 74, both hemispheres 49.8
Entorhinal gyrus
nTPM: 77.0
2613 Female, age 94, left hemisphere 129.7
2686 Male, age 75, right hemisphere 86.0
1938 Female, age 85, left hemisphere 84.3
2764 Male, age 80, right hemisphere 65.8
1787 Male, age 76, left hemisphere 64.8
2117 Female, age 91, right hemisphere 31.0
Hippocampus, CA1
nTPM: 71.9
2749 Male, age 80, left hemisphere 101.8
2045 Male, age 76, both hemispheres 83.6
1873 Female, age 85, both hemispheres 83.3
2527 Male, age 74, both hemispheres 56.8
2082 Female, age 91, right hemisphere 34.0
Hippocampus, CA2
nTPM: 55.6
1892 Male, age 76, both hemispheres 87.2
1963 Male, age 80, left hemisphere 78.4
2437 Female, age 94, left hemisphere 57.3
1940 Female, age 85, left hemisphere 42.2
2249 Male, age 74, both hemispheres 36.0
2113 Female, age 91, right hemisphere 32.3
Hippocampus, CA3
nTPM: 71.9
2620 Female, age 94, left hemisphere 125.3
2861 Female, age 67, both hemispheres 86.3
2137 Male, age 80, left hemisphere 63.1
1867 Male, age 76, both hemispheres 59.3
1891 Female, age 85, both hemispheres 54.5
2436 Male, age 74, both hemispheres 43.1
Parahippocampal cortex
nTPM: 68.5
2622 Female, age 67, right hemisphere 95.2
1850 Male, age 80, both hemispheres 81.9
1990 Female, age 91, right hemisphere 72.8
2532 Female, age 72, left hemisphere 71.2
2693 Female, age 94, both hemispheres 69.2
2245 Female, age 91, both hemispheres 66.4
1933 Female, age 85, both hemispheres 65.5
2692 Male, age 74, both hemispheres 65.2
2250 Female, age 67, right hemisphere 57.2
2018 Male, age 76, both hemispheres 40.4
Perirhinal gyrus
nTPM: 70.2
1847 Female, age 91, left hemisphere 89.1
1841 Female, age 85, right hemisphere 69.9
1794 Male, age 80, right hemisphere 68.6
2848 Male, age 76, right hemisphere 64.2
2521 Female, age 94, right hemisphere 59.2
Subiculum
nTPM: 51.7
2438 Female, age 94, left hemisphere 80.6
1977 Female, age 85, both hemispheres 63.3
2619 Male, age 74, both hemispheres 50.3
1901 Male, age 80, both hemispheres 48.3
2729 Female, age 91, right hemisphere 39.5
2042 Male, age 76, both hemispheres 27.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 5.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 5.2
Samples: 197

Max nTPM: 19.3
Min nTPM: 0.5
Std nTPM: 3.8
Median nTPM: 4.1
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 19.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 19.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 17.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 16.2
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 15.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 15.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 13.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 13.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 13.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 12.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 12.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 58.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 58.0
FF:10169-103B7 60 years, female 74.7
FF:10153-102I9 76 years, female 41.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 41.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 41.7
Samples: 4

Max nTPM: 60.3
Min nTPM: 34.6
Sample A Male 37.2
Sample B Male 34.6
Sample C Female 34.6
Sample D Female 60.3
Hippocampal formation
nTPM: 33.1
Samples: 4

Max nTPM: 48.0
Min nTPM: 21.6
Sample A Male 21.9
Sample B Male 40.8
Sample C Female 48.0
Sample D Female 21.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 4.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.2
71670682 Antisense, RP_050505_03_H04, Mouse strain C57BL/6J (56 days, male) 4.2
69782844 Antisense, RP_050505_03_H04, Mouse strain C57BL/6J (56 days, male) 3.8

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