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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:63.1 nTPM
HPA Brain:86.1 nTPM
GTEx:63.1 nTPM
FANTOM5:113.7 Scaled Tags Per Million
Pig:44.8 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 78.7
2194 Female, age 79, both hemispheres 101.0
1981 Female, age 72, midline 86.9
2048 Male, age 55, midline 82.7
2816 Male, age 47, midline 71.4
2565 Male, age 75, midline 51.7
Cervical spinal cord, dorsal horn
nTPM: 86.1
2069 Male, age 47, both hemispheres 115.5
2296 Male, age 66, both hemispheres 110.4
2173 Female, age 72, unknown 109.5
2297 Male, age 75, both hemispheres 69.8
1877 Male, age 55, unknown 64.9
2721 Male, age 90, both hemispheres 46.8
Cervical spinal cord, ventral horn
nTPM: 83.8
2068 Male, age 55, unknown 127.3
2098 Female, age 72, unknown 88.0
2820 Female, age 79, both hemispheres 77.0
2480 Male, age 75, both hemispheres 76.4
2295 Male, age 66, both hemispheres 70.0
2809 Male, age 90, both hemispheres 63.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 63.1
Samples: 159

Max nTPM: 155.2
Min nTPM: 10.9
Std nTPM: 27.7
Median nTPM: 61.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 155.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 152.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 150.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 138.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 128.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 127.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 116.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 114.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 114.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 112.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 111.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 108.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 106.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 106.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 103.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 100.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 100.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 98.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 94.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 92.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 92.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 90.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 89.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 89.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 89.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 87.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 84.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 83.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 83.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 82.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 82.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 82.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 81.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 79.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 78.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 77.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 77.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 77.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 76.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 76.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 75.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 75.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 73.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 73.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 73.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 72.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 72.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 72.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 72.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 71.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 71.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 71.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 70.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 70.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 69.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 69.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 69.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 69.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 68.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 68.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 67.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 67.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 67.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 67.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 67.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 66.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 66.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 66.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 65.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 65.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 64.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 63.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 63.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 63.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 62.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 62.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 62.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 62.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 61.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 61.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 60.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 60.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 60.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 59.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 59.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 58.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 58.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 58.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 57.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 57.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 57.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 56.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 56.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 56.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 56.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 55.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 55.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 54.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 53.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 53.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 51.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 51.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 50.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 50.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 50.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 49.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 48.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 48.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 47.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 47.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 46.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 46.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 46.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 46.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 46.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 45.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 44.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 44.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 44.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 43.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 42.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 42.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 41.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 41.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 41.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 40.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 40.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 40.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 39.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 39.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 39.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 37.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 37.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 37.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 37.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 36.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 36.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 35.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 35.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 34.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 33.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 31.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 30.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 30.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 28.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 27.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 26.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 25.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 24.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 24.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 23.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 22.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 22.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 22.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 19.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 18.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 16.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 11.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 10.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

113.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 113.7
FF:10181-103D1 60 years, female 181.0
FF:10159-103A6 76 years, female 46.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 40.7
Samples: 4

Max nTPM: 46.1
Min nTPM: 36.8
Sample A Female 39.5
Sample B Female 36.8
Sample C Male 46.1
Sample D Male 40.5
Ventral spinal cord
nTPM: 44.8
Samples: 4

Max nTPM: 51.9
Min nTPM: 37.3
Sample A Female 48.0
Sample B Female 37.3
Sample C Male 42.1
Sample D Male 51.9

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