BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.7 nTPM
HPA Brain:143.1 nTPM
GTEx:28.7 nTPM
FANTOM5:168.7 Scaled Tags Per Million
Pig:34.5 nTPM
Mouse:102.4 nTPM
Allen mouse:8.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 143.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 115.7
2289 Male, age 61, right hemisphere 135.1
2290 Female, age 72, unknown 133.3
1781 Male, age 74, unknown 125.7
2288 Male, age 75, left hemisphere 120.0
1857 Female, age 85, left hemisphere 114.7
2846 Female, age 79, unknown 113.4
1854 Male, age 80, left hemisphere 111.7
2481 Female, age 94, left hemisphere 71.4
Globus pallidus, externus
nTPM: 25.1
2646 Male, age 61, right hemisphere 44.0
2567 Female, age 72, unknown 25.3
2395 Male, age 75, both hemispheres 21.2
2772 Female, age 79, unknown 19.7
1996 Male, age 80, right hemisphere 15.1
Globus pallidus, internus
nTPM: 21.0
2483 Female, age 94, right hemisphere 43.7
2566 Female, age 72, unknown 27.1
1818 Male, age 74, unknown 26.0
2037 Male, age 80, right hemisphere 15.5
2111 Female, age 85, right hemisphere 13.4
2287 Male, age 75, right hemisphere 11.2
2778 Female, age 91, both hemispheres 10.0
Nucleus accumbens
nTPM: 105.5
1856 Female, age 91, right hemisphere 153.6
1783 Male, age 74, unknown 132.4
2824 Male, age 61, right hemisphere 125.9
2286 Male, age 75, left hemisphere 105.1
1806 Female, age 85, left hemisphere 104.5
2698 Female, age 72, unknown 90.3
2391 Female, age 94, left hemisphere 69.6
2732 Male, age 80, right hemisphere 62.4
Nucleus basalis of Meynert
nTPM: 95.4
2484 Female, age 94, left hemisphere 125.2
2393 Male, age 80, right hemisphere 119.9
2821 Male, age 75, both hemispheres 88.4
2569 Male, age 61, both hemispheres 48.2
Nucleus of the diagonal band
nTPM: 126.1
2029 Male, age 61, right hemisphere 151.5
2195 Female, age 85, both hemispheres 141.5
2775 Male, age 80, right hemisphere 127.4
1812 Female, age 91, both hemispheres 111.5
1979 Male, age 74, unknown 98.5
Putamen
nTPM: 137.8
2489 Female, age 72, unknown 174.3
1829 Male, age 74, unknown 155.4
1838 Male, age 80, right hemisphere 148.1
2466 Female, age 79, unknown 142.8
1937 Female, age 91, right hemisphere 137.1
2647 Male, age 75, left hemisphere 118.6
2482 Female, age 94, left hemisphere 88.4
Septal nuclei
nTPM: 116.1
1960 Male, age 74, unknown 142.5
2629 Female, age 94, right hemisphere 135.2
2009 Female, age 91, both hemispheres 132.3
2059 Female, age 85, both hemispheres 120.4
2031 Female, age 72, unknown 115.5
2394 Male, age 61, left hemisphere 87.2
2199 Male, age 80, right hemisphere 79.7
Stria terminalis, bed nucleus
nTPM: 143.1
2486 Female, age 94, both hemispheres 173.5
1974 Female, age 91, both hemispheres 143.0
2201 Male, age 74, unknown 112.7

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 28.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.4
Samples: 246

Max nTPM: 109.9
Min nTPM: 1.7
Std nTPM: 18.5
Median nTPM: 24.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 109.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 78.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 73.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 71.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 66.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 64.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 63.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 63.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 63.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 61.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 60.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.7
Samples: 246

Max nTPM: 65.4
Min nTPM: 0.6
Std nTPM: 15.5
Median nTPM: 29.8
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 65.4
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 64.5
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 63.8
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 62.3
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 60.6
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 60.0
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 59.9
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 57.7
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 56.3
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 55.1
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 54.2
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Brain - Putamen (basal ganglia)
Average nTPM: 26.4
Samples: 205

Max nTPM: 80.6
Min nTPM: 0.7
Std nTPM: 18.3
Median nTPM: 24.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 80.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 79.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 69.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 69.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 69.2
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 66.5
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 62.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 62.0
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 61.7
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 60.6
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 58.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 168.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 123.0
FF:10164-103B2 76 years, female 123.0
Nucleus accumbens
Scaled Tags Per Million: 150.7
FF:10037-101F1 23-56 years, mixed 150.7
Putamen
Scaled Tags Per Million: 168.7
FF:10176-103C5 60 years, female 168.7
Globus pallidus
Scaled Tags Per Million: 35.5
FF:10175-103C4 60 years, female 48.6
FF:10161-103A8 76 years, female 22.4

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 34.5
Pig sample Sample description nTPM
Caudate
nTPM: 31.1
Samples: 4

Max nTPM: 36.5
Min nTPM: 22.5
Sample A Female 22.5
Sample B Female 30.9
Sample C Male 36.5
Sample D Male 34.5
Putamen
nTPM: 34.6
Samples: 4

Max nTPM: 48.3
Min nTPM: 13.1
Sample A Female 13.1
Sample B Female 38.6
Sample C Male 48.3
Sample D Male 38.2
Septum
nTPM: 19.9
Samples: 4

Max nTPM: 26.8
Min nTPM: 12.4
Sample A Female 24.2
Sample B Female 26.8
Sample C Male 16.0
Sample D Male 12.4
Ventral pallidum
nTPM: 24.3
Samples: 4

Max nTPM: 27.9
Min nTPM: 20.2
Sample A Female 27.9
Sample B Female 27.3
Sample C Male 20.2
Sample D Male 21.9

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 102.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 102.5
Samples: 4

Max nTPM: 108.9
Min nTPM: 96.9
Sample A Male 108.9
Sample B Male 104.8
Sample C Female 99.2
Sample D Female 96.9
Septum
nTPM: 49.8
Samples: 4

Max nTPM: 55.5
Min nTPM: 44.5
Sample A Male 55.5
Sample B Male 44.5
Sample C Female 45.7
Sample D Female 53.6
Ventral forebrain
nTPM: 77.5
Samples: 4

Max nTPM: 84.3
Min nTPM: 65.2
Sample A Male 80.6
Sample B Male 79.9
Sample C Female 65.2
Sample D Female 84.3

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 8.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.3
69289459 Antisense, RP_050407_03_C06, Mouse strain C57BL/6J (56 days, male) 16.6
71735078 Antisense, RP_050719_04_G10, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 5.6
69289459 Antisense, RP_050407_03_C06, Mouse strain C57BL/6J (56 days, male) 11.3
71735078 Antisense, RP_050719_04_G10, Mouse strain C57BL/6J (56 days, male) 0.0

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