MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.3 nTPM
HPA Brain:59.7 nTPM
GTEx:32.3 nTPM
FANTOM5:127.3 Scaled Tags Per Million
Pig:24.2 nTPM
Mouse:6.2 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 59.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.5
2828 Female, age 72, unknown 64.3
2586 Male, age 75, left hemisphere 63.2
2666 Male, age 74, left hemisphere 61.8
2411 Female, age 72, unknown 58.0
1830 Male, age 51, unknown 57.4
1833 Male, age 53, unknown 56.4
1827 Male, age 72, unknown 54.6
1870 Female, age 42, unknown 54.4
2219 Male, age 76, both hemispheres 49.1
2019 Male, age 18, unknown 46.5
Dorsal raphe nucleus
nTPM: 54.2
2016 Female, age 72, unknown 56.7
2750 Male, age 76, both hemispheres 54.9
2298 Female, age 72, unknown 54.3
1828 Male, age 53, unknown 53.5
2047 Male, age 72, unknown 51.9
Inferior colliculus
nTPM: 45.5
2849 Male, age 72, unknown 48.6
1890 Male, age 53, unknown 46.8
1848 Female, age 42, unknown 44.3
2097 Female, age 72, unknown 42.1
Median raphe nucleus
nTPM: 49.8
2220 Male, age 76, midline 49.8
Periaquaductal grey, anterior
nTPM: 54.4
1795 Male, age 51, unknown 60.4
1947 Male, age 18, unknown 54.0
2502 Female, age 75, unknown 48.7
Periaquaductal grey, dorsal
nTPM: 52.1
2464 Female, age 72, unknown 57.9
1831 Male, age 72, unknown 53.2
2850 Male, age 76, both hemispheres 48.9
1840 Male, age 53, unknown 48.4
Periaquaductal grey, lateral
nTPM: 59.7
2272 Male, age 74, both hemispheres 61.3
2140 Male, age 76, both hemispheres 60.8
2053 Male, age 18, unknown 57.0
Pretectal area
nTPM: 52.8
2407 Male, age 75, both hemispheres 63.5
2316 Male, age 76, right hemisphere 63.0
2825 Male, age 18, unknown 59.5
1815 Male, age 53, unknown 53.8
2273 Male, age 74, both hemispheres 53.0
2224 Female, age 72, unknown 51.7
2007 Male, age 72, unknown 51.3
2667 Female, age 75, unknown 51.2
1817 Female, age 42, unknown 45.2
1816 Male, age 51, unknown 44.3
1944 Female, age 72, unknown 44.2
Red nucleus
nTPM: 58.5
2823 Male, age 76, right hemisphere 67.7
2769 Male, age 72, unknown 63.5
2227 Male, age 72, unknown 61.9
2503 Female, age 72, unknown 61.2
2588 Male, age 74, left hemisphere 61.1
1904 Male, age 53, unknown 60.7
2584 Male, age 75, left hemisphere 59.6
1865 Male, age 51, unknown 57.1
2785 Male, age 18, unknown 56.2
2725 Female, age 75, unknown 54.5
1954 Female, age 42, unknown 50.1
1821 Female, age 72, unknown 48.5
Substantia nigra
nTPM: 54.3
2583 Male, age 75, right hemisphere 72.1
2590 Female, age 75, unknown 69.9
2699 Male, age 18, unknown 63.1
2665 Male, age 74, both hemispheres 61.8
1851 Male, age 51, unknown 52.1
1941 Male, age 53, unknown 51.1
1916 Female, age 42, unknown 47.4
1889 Female, age 72, unknown 45.2
2409 Female, age 72, unknown 40.7
2241 Male, age 72, unknown 39.8
Superior colliculus
nTPM: 56.0
2664 Male, age 75, both hemispheres 69.6
1913 Female, age 42, unknown 64.7
1995 Male, age 72, unknown 64.3
2587 Male, age 74, left hemisphere 56.6
1839 Male, age 51, unknown 54.9
2261 Male, age 18, unknown 54.3
2668 Female, age 75, unknown 51.4
2087 Female, age 72, unknown 48.6
1796 Male, age 53, unknown 48.4
1895 Male, age 76, right hemisphere 47.7
Ventral tegmental area
nTPM: 51.3
2021 Male, age 53, unknown 60.2
1942 Male, age 51, unknown 56.2
1915 Female, age 42, unknown 51.2
2410 Female, age 72, unknown 48.5
2223 Female, age 72, unknown 46.7
2218 Male, age 76, both hemispheres 45.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.3
Samples: 139

Max nTPM: 57.2
Min nTPM: 16.2
Std nTPM: 7.6
Median nTPM: 31.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 57.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 56.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 53.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 51.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 49.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 47.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 47.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 46.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 44.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 44.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 43.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 127.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 127.3
FF:10158-103A5 76 years, female 127.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 24.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.2
Samples: 4

Max nTPM: 28.2
Min nTPM: 21.1
Sample A Female 21.1
Sample B Female 28.2
Sample C Male 21.4
Sample D Male 26.1
Midbrain
nTPM: 20.8
Samples: 4

Max nTPM: 27.4
Min nTPM: 16.3
Sample A Female 27.4
Sample B Female 19.6
Sample C Male 20.0
Sample D Male 16.3
Periaqueductal gray
nTPM: 18.6
Samples: 3

Max nTPM: 20.1
Min nTPM: 17.0
Sample B Female 18.7
Sample C Male 20.1
Sample D Male 17.0
Superior colliculi
nTPM: 24.2
Samples: 4

Max nTPM: 37.8
Min nTPM: 18.3
Sample A Female 21.9
Sample B Female 37.8
Sample C Male 18.9
Sample D Male 18.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.2
Samples: 4

Max nTPM: 6.9
Min nTPM: 5.4
Sample A Male 6.9
Sample B Male 6.1
Sample C Female 5.4
Sample D Female 6.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
75692945 Antisense, RP_060208_02_B07, Mouse strain C57BL/6J (56 days, male) 9.1
71579879 Antisense, RP_050915_04_B10, Mouse strain C57BL/6J (56 days, male) 0.2

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