MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:148.7 nTPM
HPA Brain:64.8 nTPM
GTEx:148.7 nTPM
FANTOM5:83.2 Scaled Tags Per Million
Pig:20.8 nTPM
Mouse:24.1 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 64.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.2
2586 Male, age 75, left hemisphere 93.6
2019 Male, age 18, unknown 68.5
2666 Male, age 74, left hemisphere 61.8
1827 Male, age 72, unknown 61.1
2828 Female, age 72, unknown 56.7
1870 Female, age 42, unknown 54.1
2411 Female, age 72, unknown 50.4
1830 Male, age 51, unknown 50.2
1833 Male, age 53, unknown 48.6
2219 Male, age 76, both hemispheres 47.3
Dorsal raphe nucleus
nTPM: 53.3
1828 Male, age 53, unknown 56.9
2047 Male, age 72, unknown 55.2
2750 Male, age 76, both hemispheres 54.6
2298 Female, age 72, unknown 53.1
2016 Female, age 72, unknown 46.6
Inferior colliculus
nTPM: 52.6
2097 Female, age 72, unknown 61.0
1890 Male, age 53, unknown 58.1
1848 Female, age 42, unknown 48.2
2849 Male, age 72, unknown 43.2
Median raphe nucleus
nTPM: 54.2
2220 Male, age 76, midline 54.2
Periaquaductal grey, anterior
nTPM: 57.0
2502 Female, age 75, unknown 64.1
1795 Male, age 51, unknown 53.6
1947 Male, age 18, unknown 53.4
Periaquaductal grey, dorsal
nTPM: 41.6
1831 Male, age 72, unknown 47.1
1840 Male, age 53, unknown 41.3
2850 Male, age 76, both hemispheres 39.2
2464 Female, age 72, unknown 38.9
Periaquaductal grey, lateral
nTPM: 40.8
2053 Male, age 18, unknown 44.1
2140 Male, age 76, both hemispheres 39.2
2272 Male, age 74, both hemispheres 39.2
Pretectal area
nTPM: 53.1
1817 Female, age 42, unknown 67.4
2007 Male, age 72, unknown 65.1
1944 Female, age 72, unknown 64.8
1816 Male, age 51, unknown 59.8
1815 Male, age 53, unknown 57.1
2667 Female, age 75, unknown 50.4
2825 Male, age 18, unknown 48.8
2407 Male, age 75, both hemispheres 45.4
2316 Male, age 76, right hemisphere 43.7
2224 Female, age 72, unknown 43.2
2273 Male, age 74, both hemispheres 38.6
Red nucleus
nTPM: 64.8
2503 Female, age 72, unknown 78.4
1821 Female, age 72, unknown 70.5
2785 Male, age 18, unknown 67.8
1954 Female, age 42, unknown 67.4
1865 Male, age 51, unknown 63.9
2227 Male, age 72, unknown 63.9
2769 Male, age 72, unknown 63.8
1904 Male, age 53, unknown 63.3
2588 Male, age 74, left hemisphere 61.4
2725 Female, age 75, unknown 60.5
2584 Male, age 75, left hemisphere 60.0
2823 Male, age 76, right hemisphere 56.9
Substantia nigra
nTPM: 63.6
1916 Female, age 42, unknown 105.7
1851 Male, age 51, unknown 75.9
1889 Female, age 72, unknown 65.2
1941 Male, age 53, unknown 64.2
2665 Male, age 74, both hemispheres 64.2
2699 Male, age 18, unknown 62.5
2583 Male, age 75, right hemisphere 56.5
2241 Male, age 72, unknown 51.7
2590 Female, age 75, unknown 49.0
2409 Female, age 72, unknown 41.1
Superior colliculus
nTPM: 55.4
2668 Female, age 75, unknown 67.9
2664 Male, age 75, both hemispheres 66.4
1796 Male, age 53, unknown 60.6
2087 Female, age 72, unknown 58.7
2587 Male, age 74, left hemisphere 57.6
1995 Male, age 72, unknown 52.3
1913 Female, age 42, unknown 51.5
1839 Male, age 51, unknown 47.1
1895 Male, age 76, right hemisphere 46.1
2261 Male, age 18, unknown 46.0
Ventral tegmental area
nTPM: 60.7
1915 Female, age 42, unknown 77.2
2223 Female, age 72, unknown 63.5
1942 Male, age 51, unknown 61.8
2218 Male, age 76, both hemispheres 57.2
2410 Female, age 72, unknown 55.6
2021 Male, age 53, unknown 49.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 148.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 148.7
Samples: 139

Max nTPM: 323.1
Min nTPM: 54.7
Std nTPM: 40.8
Median nTPM: 144.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 323.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 306.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 248.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 248.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 246.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 222.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 222.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 221.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 217.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 212.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 209.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 83.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.2
FF:10158-103A5 76 years, female 83.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 20.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.8
Samples: 4

Max nTPM: 29.3
Min nTPM: 16.4
Sample A Female 29.3
Sample B Female 18.0
Sample C Male 19.6
Sample D Male 16.4
Midbrain
nTPM: 17.3
Samples: 4

Max nTPM: 23.2
Min nTPM: 12.7
Sample A Female 23.2
Sample B Female 18.7
Sample C Male 14.4
Sample D Male 12.7
Periaqueductal gray
nTPM: 16.5
Samples: 3

Max nTPM: 19.7
Min nTPM: 13.2
Sample B Female 16.6
Sample C Male 19.7
Sample D Male 13.2
Superior colliculi
nTPM: 19.9
Samples: 4

Max nTPM: 24.6
Min nTPM: 15.6
Sample A Female 24.6
Sample B Female 23.6
Sample C Male 15.6
Sample D Male 15.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 24.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.1
Samples: 4

Max nTPM: 26.8
Min nTPM: 22.1
Sample A Male 23.9
Sample B Male 23.4
Sample C Female 22.1
Sample D Female 26.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69854175 Antisense, RP_050324_04_C07, Mouse strain C57BL/6J (56 days, male) 0.4

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