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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
103.1
Sample id
Sample description
nTPM
Amygdala nTPM: 46.2
2517
Female, age 94, left hemisphere
87.1
2514
Male, age 75, right hemisphere
63.9
1987
Female, age 91, left hemisphere
58.6
2814
Male, age 76, right hemisphere
15.0
2695
Female, age 67, right hemisphere
6.6
Basal amygdala nTPM: 83.8
2243
Female, age 91, right hemisphere
130.4
2685
Female, age 94, left hemisphere
100.0
2609
Male, age 75, right hemisphere
82.2
2110
Male, age 80, left hemisphere
72.7
2827
Female, age 67, right hemisphere
63.2
1955
Male, age 76, both hemispheres
54.1
Central amygdala nTPM: 58.3
2826
Female, age 94, left hemisphere
133.4
2239
Male, age 80, left hemisphere
78.1
2515
Male, age 75, right hemisphere
40.2
2701
Female, age 91, right hemisphere
29.2
1905
Male, age 76, both hemispheres
10.5
Corticomedial amygdala nTPM: 103.1
2829
Male, age 80, left hemisphere
181.2
2428
Male, age 75, right hemisphere
107.5
2429
Female, age 94, left hemisphere
100.8
2242
Female, age 91, right hemisphere
96.8
2535
Female, age 67, right hemisphere
76.9
2240
Male, age 76, both hemispheres
55.4
Lateral amygdala nTPM: 71.4
2534
Female, age 94, left hemisphere
175.0
2256
Male, age 80, left hemisphere
74.9
2516
Male, age 75, right hemisphere
52.7
1883
Male, age 76, both hemispheres
49.9
2255
Female, age 91, right hemisphere
38.9
2830
Female, age 67, right hemisphere
37.0
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
244.6
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 244.6
Samples: 152
Max nTPM: 848.6
Min nTPM: 12.8
Std nTPM: 157.1
Median nTPM: 207.5
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
848.6
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
706.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
684.5
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
619.6
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
605.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
578.8
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
538.2
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
508.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
506.5
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
504.5
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
498.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
494.0
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
467.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
461.7
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
461.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
460.8
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
460.5
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
454.9
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
446.3
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
433.9
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
430.6
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
414.6
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
410.7
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
402.8
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
401.7
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
400.4
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
395.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
393.5
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
393.3
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
391.8
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
389.0
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
385.0
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
378.6
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
376.8
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
375.6
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
363.2
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
355.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
351.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
349.3
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
345.7
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
343.5
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
341.3
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
335.2
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
334.9
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
314.5
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
312.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
309.7
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
305.6
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
305.1
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
295.7
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
281.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
281.2
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
272.2
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
269.6
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
267.4
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
265.7
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
264.1
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
264.1
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
263.7
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
258.8
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
251.7
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
242.9
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
236.6
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
231.7
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
229.5
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
227.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
222.1
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
220.5
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
219.9
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
215.9
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
213.5
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
212.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
212.6
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
211.8
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
210.1
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
210.0
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
205.0
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
196.9
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
196.0
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
196.0
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
195.8
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
195.7
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
193.5
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
193.1
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
190.3
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
188.4
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
184.8
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
181.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
178.4
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
177.7
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
176.6
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
174.8
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
174.7
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
174.5
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
171.7
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
168.6
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
162.5
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
162.2
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
161.7
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
160.8
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
160.6
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
152.8
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
141.9
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
140.9
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
139.0
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
137.1
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
135.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
131.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
131.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
130.5
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
130.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
128.3
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
127.4
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
126.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
124.9
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
124.4
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
123.6
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
121.5
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
116.6
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
113.1
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
112.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
112.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
109.5
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
103.8
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
103.1
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
98.7
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
96.9
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
93.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
93.0
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
88.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
85.2
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
82.3
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
82.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
80.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
76.9
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
72.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
70.8
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
68.3
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
68.1
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
64.5
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
64.4
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
61.1
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
57.4
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
56.8
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
52.3
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
48.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
40.3
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
39.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
33.0
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
29.6
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
20.5
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
12.8
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
418.0
Mouse sample
Sample description
nTPM
Amygdala nTPM: 418.0
Samples: 4
Max nTPM: 461.4
Min nTPM: 352.1
Sample A
Male
403.3
Sample B
Male
455.1
Sample C
Female
461.4
Sample D
Female
352.1
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
