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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:254.5 nTPM
HPA Brain:291.6 nTPM
GTEx:254.5 nTPM
FANTOM5:277.3 Scaled Tags Per Million
Pig:160.4 nTPM
Mouse:252.5 nTPM
Allen mouse:1.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

291.6
Sample id Sample description nTPM
Amygdala
nTPM: 251.1
2695 Female, age 67, right hemisphere 346.0
2514 Male, age 75, right hemisphere 239.1
2517 Female, age 94, left hemisphere 232.0
1987 Female, age 91, left hemisphere 219.6
2814 Male, age 76, right hemisphere 218.9
Basal amygdala
nTPM: 232.6
2827 Female, age 67, right hemisphere 377.9
2685 Female, age 94, left hemisphere 236.2
2609 Male, age 75, right hemisphere 223.5
2110 Male, age 80, left hemisphere 199.3
1955 Male, age 76, both hemispheres 191.4
2243 Female, age 91, right hemisphere 167.3
Central amygdala
nTPM: 291.6
2826 Female, age 94, left hemisphere 589.2
2515 Male, age 75, right hemisphere 287.7
2239 Male, age 80, left hemisphere 199.8
1905 Male, age 76, both hemispheres 192.1
2701 Female, age 91, right hemisphere 189.4
Corticomedial amygdala
nTPM: 198.6
2535 Female, age 67, right hemisphere 233.5
2428 Male, age 75, right hemisphere 220.0
2829 Male, age 80, left hemisphere 202.9
2240 Male, age 76, both hemispheres 201.6
2242 Female, age 91, right hemisphere 170.2
2429 Female, age 94, left hemisphere 163.5
Lateral amygdala
nTPM: 284.2
2830 Female, age 67, right hemisphere 484.2
2534 Female, age 94, left hemisphere 334.0
2516 Male, age 75, right hemisphere 316.8
1883 Male, age 76, both hemispheres 210.7
2256 Male, age 80, left hemisphere 205.7
2255 Female, age 91, right hemisphere 153.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

254.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 254.5
Samples: 152

Max nTPM: 739.6
Min nTPM: 136.7
Std nTPM: 90.0
Median nTPM: 230.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 739.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 532.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 485.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 483.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 438.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 429.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 419.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 418.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 415.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 409.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 409.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 408.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 408.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 402.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 395.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 391.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 384.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 374.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 364.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 358.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 352.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 350.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 345.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 342.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 335.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 334.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 327.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 326.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 325.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 319.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 319.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 312.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 311.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 310.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 302.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 299.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 295.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 292.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 292.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 285.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 281.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 281.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 281.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 275.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 274.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 273.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 273.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 272.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 271.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 271.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 267.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 266.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 264.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 262.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 259.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 259.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 257.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 255.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 252.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 247.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 247.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 246.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 244.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 244.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 242.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 242.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 242.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 239.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 239.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 238.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 238.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 237.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 236.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 235.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 230.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 230.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 229.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 229.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 229.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 228.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 227.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 227.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 227.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 227.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 224.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 224.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 223.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 222.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 219.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 218.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 216.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 214.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 214.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 213.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 212.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 209.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 207.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 205.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 205.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 204.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 202.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 199.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 198.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 194.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 194.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 193.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 193.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 192.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 191.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 191.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 191.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 190.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 189.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 189.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 188.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 187.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 187.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 187.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 186.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 185.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 183.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 183.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 182.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 182.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 181.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 181.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 181.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 180.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 180.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 179.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 175.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 173.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 172.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 170.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 168.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 166.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 165.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 164.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 164.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 163.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 163.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 162.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 159.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 159.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 158.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 157.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 155.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 155.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 153.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 152.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 141.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 136.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

277.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 277.3
FF:10151-102I7 76 years, female 277.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.4
Pig sample Sample description nTPM
Amygdala
nTPM: 160.4
Samples: 4

Max nTPM: 193.3
Min nTPM: 137.3
Sample A Female 171.2
Sample B Female 193.3
Sample C Male 137.3
Sample D Male 139.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

252.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 252.5
Samples: 4

Max nTPM: 266.9
Min nTPM: 228.6
Sample A Male 259.5
Sample B Male 266.9
Sample C Female 228.6
Sample D Female 254.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.9
75198178 Antisense, RP_060502_02_B04, Mouse strain C57BL/6J (56 days, male) 1.9

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