MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.9 nTPM
HPA Brain:30.9 nTPM
GTEx:14.9 nTPM
FANTOM5:29.8 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.8
1827 Male, age 72, unknown 28.5
2828 Female, age 72, unknown 21.7
2411 Female, age 72, unknown 14.8
2019 Male, age 18, unknown 14.4
2666 Male, age 74, left hemisphere 13.2
1830 Male, age 51, unknown 12.2
1870 Female, age 42, unknown 11.6
2219 Male, age 76, both hemispheres 11.3
2586 Male, age 75, left hemisphere 10.2
1833 Male, age 53, unknown 9.7
Dorsal raphe nucleus
nTPM: 18.6
2298 Female, age 72, unknown 27.0
2750 Male, age 76, both hemispheres 23.8
2047 Male, age 72, unknown 16.1
2016 Female, age 72, unknown 13.4
1828 Male, age 53, unknown 12.6
Inferior colliculus
nTPM: 11.5
1848 Female, age 42, unknown 13.2
2097 Female, age 72, unknown 12.9
2849 Male, age 72, unknown 11.0
1890 Male, age 53, unknown 8.9
Median raphe nucleus
nTPM: 30.9
2220 Male, age 76, midline 30.9
Periaquaductal grey, anterior
nTPM: 21.3
2502 Female, age 75, unknown 25.9
1795 Male, age 51, unknown 22.4
1947 Male, age 18, unknown 15.6
Periaquaductal grey, dorsal
nTPM: 20.6
2850 Male, age 76, both hemispheres 29.5
1831 Male, age 72, unknown 20.1
1840 Male, age 53, unknown 18.5
2464 Female, age 72, unknown 14.2
Periaquaductal grey, lateral
nTPM: 27.2
2140 Male, age 76, both hemispheres 32.3
2272 Male, age 74, both hemispheres 24.8
2053 Male, age 18, unknown 24.4
Pretectal area
nTPM: 25.1
1816 Male, age 51, unknown 46.9
2007 Male, age 72, unknown 33.7
1944 Female, age 72, unknown 33.0
1815 Male, age 53, unknown 32.5
2273 Male, age 74, both hemispheres 24.6
1817 Female, age 42, unknown 23.6
2316 Male, age 76, right hemisphere 22.5
2224 Female, age 72, unknown 22.2
2825 Male, age 18, unknown 16.3
2407 Male, age 75, both hemispheres 11.4
2667 Female, age 75, unknown 9.2
Red nucleus
nTPM: 9.6
2725 Female, age 75, unknown 20.5
2785 Male, age 18, unknown 14.9
2588 Male, age 74, left hemisphere 12.2
2584 Male, age 75, left hemisphere 9.8
2503 Female, age 72, unknown 8.8
1821 Female, age 72, unknown 8.2
2823 Male, age 76, right hemisphere 8.1
2227 Male, age 72, unknown 7.4
1904 Male, age 53, unknown 7.2
1954 Female, age 42, unknown 6.2
2769 Male, age 72, unknown 6.2
1865 Male, age 51, unknown 5.8
Substantia nigra
nTPM: 17.1
1889 Female, age 72, unknown 28.7
2583 Male, age 75, right hemisphere 21.4
1941 Male, age 53, unknown 19.6
2590 Female, age 75, unknown 19.4
2665 Male, age 74, both hemispheres 16.5
2241 Male, age 72, unknown 14.8
1851 Male, age 51, unknown 14.4
1916 Female, age 42, unknown 13.8
2409 Female, age 72, unknown 13.4
2699 Male, age 18, unknown 9.1
Superior colliculus
nTPM: 20.6
2261 Male, age 18, unknown 40.2
2087 Female, age 72, unknown 32.4
1796 Male, age 53, unknown 31.3
2587 Male, age 74, left hemisphere 21.6
1895 Male, age 76, right hemisphere 16.7
1913 Female, age 42, unknown 15.5
2668 Female, age 75, unknown 13.7
1839 Male, age 51, unknown 12.9
1995 Male, age 72, unknown 12.8
2664 Male, age 75, both hemispheres 8.5
Ventral tegmental area
nTPM: 15.7
1942 Male, age 51, unknown 19.2
2021 Male, age 53, unknown 17.8
1915 Female, age 42, unknown 16.6
2218 Male, age 76, both hemispheres 15.1
2410 Female, age 72, unknown 13.8
2223 Female, age 72, unknown 11.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.9
Samples: 139

Max nTPM: 61.1
Min nTPM: 3.6
Std nTPM: 9.5
Median nTPM: 12.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 61.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 48.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 48.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 44.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 41.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 40.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 36.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 35.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 35.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 34.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 34.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 29.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.8
FF:10158-103A5 76 years, female 29.8

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