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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
162.3
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 148.8
2188
Female, age 91, both hemispheres
201.3
2301
Female, age 85, both hemispheres
166.1
2090
Male, age 80, both hemispheres
154.5
1984
Male, age 76, both hemispheres
73.5
Dorsal cochlear nucleus nTPM: 125.3
2802
Male, age 74, right hemisphere
142.8
2187
Female, age 91, both hemispheres
130.5
2370
Male, age 61, both hemispheres
127.9
2378
Male, age 80, both hemispheres
121.9
2058
Male, age 76, both hemispheres
103.2
Dorsal tegmental nucleus nTPM: 119.3
2083
Male, age 80, both hemispheres
137.8
2326
Male, age 74, both hemispheres
125.8
2358
Male, age 61, both hemispheres
111.6
1936
Male, age 76, left hemisphere
101.9
Dorsolateral tegmental area nTPM: 112.5
2337
Male, age 61, both hemispheres
144.6
2654
Male, age 80, both hemispheres
142.5
2751
Female, age 85, both hemispheres
116.1
2141
Male, age 76, both hemispheres
80.8
2360
Male, age 74, both hemispheres
78.2
Kolliker-Fuse nucleus nTPM: 140.3
2793
Female, age 91, left hemisphere
232.0
2163
Male, age 80, both hemispheres
117.8
2315
Male, age 76, right hemisphere
71.0
Lateral lemniscal nuclei nTPM: 128.6
2320
Female, age 91, left hemisphere
179.0
2169
Male, age 76, both hemispheres
127.3
2746
Female, age 85, left hemisphere
118.3
2453
Male, age 74, right hemisphere
116.8
2036
Male, age 80, both hemispheres
101.7
Lateral parabrachial nucleus nTPM: 148.7
2792
Male, age 76, both hemispheres
201.2
2790
Male, age 61, both hemispheres
152.7
2013
Male, age 80, both hemispheres
135.9
2139
Female, age 85, right hemisphere
104.9
Lateral vestibular nucleus nTPM: 133.6
2311
Male, age 80, both hemispheres
141.9
2184
Male, age 76, both hemispheres
125.4
Locus coeruleus nTPM: 83.4
2720
Male, age 74, both hemispheres
124.5
2162
Male, age 80, both hemispheres
95.5
2788
Male, age 74, unknown
82.8
2014
Male, age 55, unknown
81.5
2317
Female, age 72, unknown
77.6
2123
Female, age 91, both hemispheres
64.0
1980
Male, age 76, both hemispheres
57.6
Medial parabrachial nucleus nTPM: 127.9
2156
Male, age 61, both hemispheres
154.5
2854
Male, age 80, both hemispheres
134.8
2786
Male, age 76, both hemispheres
127.4
2170
Female, age 91, both hemispheres
122.2
2463
Female, age 85, right hemisphere
100.6
Medial periolivary nuclei nTPM: 121.8
2458
Female, age 91, both hemispheres
166.1
2081
Male, age 80, both hemispheres
141.7
2063
Male, age 76, both hemispheres
104.5
2171
Female, age 85, both hemispheres
99.9
2791
Male, age 74, right hemisphere
96.9
Motor facial nucleus nTPM: 132.4
2697
Female, age 85, both hemispheres
204.9
2327
Male, age 80, both hemispheres
134.4
2126
Male, age 61, both hemispheres
129.6
2795
Female, age 91, both hemispheres
126.0
2365
Male, age 74, right hemisphere
109.9
2062
Male, age 76, both hemispheres
89.5
Motor trigeminal nucleus nTPM: 139.3
2321
Female, age 91, both hemispheres
165.6
2309
Male, age 76, both hemispheres
141.1
2335
Male, age 61, both hemispheres
138.4
2560
Male, age 74, both hemispheres
127.3
2079
Male, age 80, both hemispheres
124.0
Nuclei of the trapezoid body nTPM: 115.7
2166
Male, age 80, both hemispheres
151.7
2368
Female, age 91, both hemispheres
131.6
2159
Male, age 61, both hemispheres
107.5
1983
Male, age 76, both hemispheres
107.4
2735
Female, age 85, both hemispheres
80.2
Nucleus raphe magnus nTPM: 116.8
2328
Male, age 80, both hemispheres
150.9
2459
Female, age 91, both hemispheres
138.7
2051
Male, age 76, both hemispheres
135.0
2455
Male, age 74, both hemispheres
103.0
2172
Female, age 85, both hemispheres
92.5
2160
Male, age 61, both hemispheres
80.6
Paramedian reticular nucleus nTPM: 123.5
2052
Male, age 76, both hemispheres
154.0
2313
Male, age 61, both hemispheres
120.9
2050
Female, age 85, both hemispheres
115.6
2057
Male, age 80, both hemispheres
103.7
Pedunculopontine tegmental nucleus nTPM: 115.8
2338
Male, age 61, both hemispheres
134.8
2334
Male, age 80, both hemispheres
121.1
1921
Female, age 85, both hemispheres
91.4
Pontine nuclei nTPM: 127.5
2319
Female, age 91, both hemispheres
183.2
1968
Male, age 76, left hemisphere
147.7
2115
Male, age 80, left hemisphere
144.6
2454
Male, age 74, left hemisphere
137.3
2109
Female, age 72, unknown
120.6
1863
Male, age 55, unknown
110.8
2787
Female, age 85, both hemispheres
99.0
2727
Male, age 61, right hemisphere
76.4
Pontine raphe nucleus nTPM: 100.1
2853
Male, age 76, midline
101.6
2122
Female, age 85, midline
98.7
Posteroventral cochlear nucleus nTPM: 162.3
2135
Female, age 91, both hemispheres
232.4
2341
Male, age 80, both hemispheres
181.7
2371
Male, age 61, both hemispheres
146.9
2070
Male, age 76, both hemispheres
141.1
2752
Female, age 85, both hemispheres
109.5
Principal sensory trigeminal nucleus nTPM: 126.2
2367
Female, age 91, left hemisphere
177.6
2324
Male, age 76, both hemispheres
135.5
2008
Male, age 80, left hemisphere
99.5
2158
Male, age 61, both hemispheres
92.4
Reticular pontine nucleus, caudal nTPM: 146.4
2457
Female, age 91, both hemispheres
170.8
2559
Male, age 74, both hemispheres
145.7
2092
Male, age 76, both hemispheres
139.2
2332
Male, age 80, right hemisphere
129.6
Reticular pontine nucleus, oral nTPM: 139.6
2366
Female, age 91, both hemispheres
227.4
2167
Male, age 76, both hemispheres
133.6
1939
Male, age 80, both hemispheres
122.6
2012
Female, age 85, both hemispheres
111.1
2361
Male, age 74, both hemispheres
103.2
Reticulotegmental nucleus nTPM: 128.4
2452
Male, age 74, both hemispheres
137.7
2322
Female, age 91, both hemispheres
136.7
2333
Male, age 80, both hemispheres
130.5
2325
Male, age 76, both hemispheres
108.6
Spinal trigeminal nucleus, oral nTPM: 111.2
2164
Male, age 80, both hemispheres
130.8
1978
Male, age 76, both hemispheres
121.5
2737
Female, age 85, both hemispheres
81.3
Subcoeruleus area nTPM: 122.6
2369
Female, age 85, left hemisphere
139.9
2089
Male, age 76, left hemisphere
133.9
2451
Male, age 74, both hemispheres
124.6
1958
Male, age 80, both hemispheres
111.3
2323
Female, age 91, left hemisphere
103.2
Superior olive nTPM: 138.0
2561
Female, age 91, both hemispheres
176.7
2020
Male, age 76, both hemispheres
165.5
2329
Male, age 80, right hemisphere
148.1
1875
Female, age 85, both hemispheres
106.7
2364
Male, age 74, right hemisphere
93.1
Ventral periolivary nuclei nTPM: 136.6
2023
Male, age 76, both hemispheres
171.4
2794
Female, age 91, left hemisphere
150.5
2165
Male, age 80, both hemispheres
128.3
2130
Female, age 85, both hemispheres
96.3
Ventrolateral tegmental area, A5 NE cell group nTPM: 129.5
2840
Female, age 85, both hemispheres
144.5
2161
Male, age 80, both hemispheres
133.4
2359
Male, age 61, both hemispheres
132.3
1959
Male, age 76, both hemispheres
131.3
2456
Female, age 91, both hemispheres
126.8
2449
Male, age 74, both hemispheres
108.7
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
77.5
Pig sample
Sample description
nTPM
Pons nTPM: 77.5
Samples: 4
Max nTPM: 89.0
Min nTPM: 68.5
Sample A
Female
68.5
Sample B
Female
73.8
Sample C
Male
78.8
Sample D
Male
89.0
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
