PONS AND MEDULLA - Expression summary
Mouse brain, Intensity
Medulla oblongatai 		61.404
Mouse brain, Intensity
Ponsi 		120.599
RNA expressioni
HPA Brain:183.8 nTPM
FANTOM5:451.4 Scaled Tags Per Million
Pig:95.5 nTPM
Mouse:23.1 nTPM
Allen mouse:4.6 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei , antibody HPA037943
Medulla oblongata mean intensity 61.404
intensityi
FRONT BACK
Nucleus of the solitary tract 61.404
Raphe magnus nucleus 16.949
Cochlear nucleus 14.213
Lateral paragigantocellular nucleus 20.671
Raphe pallidus nucleus 11.934
Facial nucleus 15.478
Hypoglossal nucleus 57.084
Ambiguus nucleus 20.605
External cuneate nucleus -
Inferior olivary nucleus 16.354
Raphe obscures nucleus 20.506
Dorsal motor nucleus of vagus -
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 16.501
Parabrachial nucleus 48.034
Principle sensory trigeminal nucleus 16.016
Locus coeruleus 120.599
Pontine nucleus 17.252
Vestibular nucleus 30.204
Pontine reticular nucleus, oral 18.316
Lateral lemniscus 15.704
Superior paraolivary nucleus 13.732

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 183.8
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 148.8
2188 Female, age 91, both hemispheres 201.3
2301 Female, age 85, both hemispheres 166.1
2090 Male, age 80, both hemispheres 154.5
1984 Male, age 76, both hemispheres 73.5
Area postrema
nTPM: 135.5
2306 Male, age 80, both hemispheres 183.4
2799 Male, age 61, both hemispheres 131.3
2054 Male, age 76, both hemispheres 91.9
Dorsal cochlear nucleus
nTPM: 125.3
2802 Male, age 74, right hemisphere 142.8
2187 Female, age 91, both hemispheres 130.5
2370 Male, age 61, both hemispheres 127.9
2378 Male, age 80, both hemispheres 121.9
2058 Male, age 76, both hemispheres 103.2
Dorsal medullary reticular nucleus
nTPM: 137.0
2373 Male, age 61, both hemispheres 160.9
2088 Male, age 76, both hemispheres 128.7
2040 Female, age 85, both hemispheres 121.5
Dorsal motor vagal complex
nTPM: 136.4
2797 Male, age 61, both hemispheres 210.1
2807 Female, age 85, both hemispheres 172.8
2185 Male, age 76, both hemispheres 155.3
2643 Male, age 74, both hemispheres 134.8
2000 Male, age 74, unknown 115.4
2813 Female, age 72, unknown 105.7
2133 Female, age 91, both hemispheres 102.9
2844 Male, age 55, unknown 93.7
Dorsal tegmental nucleus
nTPM: 119.3
2083 Male, age 80, both hemispheres 137.8
2326 Male, age 74, both hemispheres 125.8
2358 Male, age 61, both hemispheres 111.6
1936 Male, age 76, left hemisphere 101.9
Dorsolateral tegmental area
nTPM: 112.5
2337 Male, age 61, both hemispheres 144.6
2654 Male, age 80, both hemispheres 142.5
2751 Female, age 85, both hemispheres 116.1
2141 Male, age 76, both hemispheres 80.8
2360 Male, age 74, both hemispheres 78.2
Gigantocellular reticular nuclei, medullary
nTPM: 124.1
2314 Male, age 61, both hemispheres 160.6
2310 Male, age 80, both hemispheres 135.6
2387 Female, age 91, both hemispheres 134.1
2022 Male, age 76, right hemisphere 123.9
1876 Female, age 85, both hemispheres 111.5
2462 Male, age 74, both hemispheres 78.9
Gigantocellular reticular nuclei, pars
nTPM: 144.5
2330 Male, age 80, both hemispheres 164.3
2336 Male, age 61, both hemispheres 161.9
2706 Male, age 80, both hemispheres 157.7
2084 Female, age 85, both hemispheres 123.0
2168 Male, age 76, both hemispheres 115.5
Inferior olive
nTPM: 131.9
2628 Female, age 91, both hemispheres 173.4
2178 Male, age 61, both hemispheres 133.6
2085 Female, age 85, both hemispheres 123.0
2379 Male, age 80, both hemispheres 119.7
2563 Male, age 74, both hemispheres 110.0
Kolliker-Fuse nucleus
nTPM: 140.3
2793 Female, age 91, left hemisphere 232.0
2163 Male, age 80, both hemispheres 117.8
2315 Male, age 76, right hemisphere 71.0
Lateral lemniscal nuclei
nTPM: 128.6
2320 Female, age 91, left hemisphere 179.0
2169 Male, age 76, both hemispheres 127.3
2746 Female, age 85, left hemisphere 118.3
2453 Male, age 74, right hemisphere 116.8
2036 Male, age 80, both hemispheres 101.7
Lateral medullary reticular nucleus
nTPM: 141.6
2852 Male, age 80, both hemispheres 166.7
2374 Male, age 61, both hemispheres 159.5
2190 Female, age 85, both hemispheres 140.7
2804 Female, age 91, both hemispheres 133.8
2044 Male, age 76, both hemispheres 131.5
2305 Male, age 74, both hemispheres 117.3
Lateral parabrachial nucleus
nTPM: 148.7
2792 Male, age 76, both hemispheres 201.2
2790 Male, age 61, both hemispheres 152.7
2013 Male, age 80, both hemispheres 135.9
2139 Female, age 85, right hemisphere 104.9
Lateral vestibular nucleus
nTPM: 133.6
2311 Male, age 80, both hemispheres 141.9
2184 Male, age 76, both hemispheres 125.4
Locus coeruleus
nTPM: 83.4
2720 Male, age 74, both hemispheres 124.5
2162 Male, age 80, both hemispheres 95.5
2788 Male, age 74, unknown 82.8
2014 Male, age 55, unknown 81.5
2317 Female, age 72, unknown 77.6
2123 Female, age 91, both hemispheres 64.0
1980 Male, age 76, both hemispheres 57.6
Medial olivary nucleus
nTPM: 137.9
2851 Male, age 80, both hemispheres 157.0
1943 Male, age 61, both hemispheres 151.6
1962 Male, age 76, both hemispheres 127.7
2138 Female, age 91, both hemispheres 115.3
Medial parabrachial nucleus
nTPM: 127.9
2156 Male, age 61, both hemispheres 154.5
2854 Male, age 80, both hemispheres 134.8
2786 Male, age 76, both hemispheres 127.4
2170 Female, age 91, both hemispheres 122.2
2463 Female, age 85, right hemisphere 100.6
Medial periolivary nuclei
nTPM: 121.8
2458 Female, age 91, both hemispheres 166.1
2081 Male, age 80, both hemispheres 141.7
2063 Male, age 76, both hemispheres 104.5
2171 Female, age 85, both hemispheres 99.9
2791 Male, age 74, right hemisphere 96.9
Medial vestibular nucleus
nTPM: 117.8
2803 Female, age 91, both hemispheres 158.5
2624 Male, age 61, both hemispheres 149.1
2093 Male, age 80, both hemispheres 127.5
2801 Male, age 74, both hemispheres 110.8
2743 Female, age 85, both hemispheres 84.8
2134 Male, age 76, both hemispheres 76.2
Motor facial nucleus
nTPM: 132.4
2697 Female, age 85, both hemispheres 204.9
2327 Male, age 80, both hemispheres 134.4
2126 Male, age 61, both hemispheres 129.6
2795 Female, age 91, both hemispheres 126.0
2365 Male, age 74, right hemisphere 109.9
2062 Male, age 76, both hemispheres 89.5
Motor hypoglossal nucleus
nTPM: 128.8
2132 Female, age 85, both hemispheres 166.9
2182 Male, age 80, both hemispheres 164.8
2461 Male, age 61, both hemispheres 128.4
2125 Female, age 91, both hemispheres 122.6
2277 Male, age 76, both hemispheres 61.2
Motor trigeminal nucleus
nTPM: 139.3
2321 Female, age 91, both hemispheres 165.6
2309 Male, age 76, both hemispheres 141.1
2335 Male, age 61, both hemispheres 138.4
2560 Male, age 74, both hemispheres 127.3
2079 Male, age 80, both hemispheres 124.0
Nuclei of the trapezoid body
nTPM: 115.7
2166 Male, age 80, both hemispheres 151.7
2368 Female, age 91, both hemispheres 131.6
2159 Male, age 61, both hemispheres 107.5
1983 Male, age 76, both hemispheres 107.4
2735 Female, age 85, both hemispheres 80.2
Nucleus ambiguus
nTPM: 123.9
2071 Male, age 76, both hemispheres 138.3
2096 Female, age 85, both hemispheres 109.5
Nucleus cuneatus
nTPM: 153.6
2805 Female, age 91, both hemispheres 194.1
2808 Female, age 85, both hemispheres 184.7
2381 Male, age 80, both hemispheres 173.3
2100 Male, age 76, both hemispheres 153.6
2380 Male, age 80, both hemispheres 153.6
2562 Male, age 61, both hemispheres 141.8
2376 Male, age 61, both hemispheres 128.9
2131 Male, age 76, both hemispheres 127.9
2564 Male, age 74, both hemispheres 125.0
Nucleus gracilis
nTPM: 183.8
2382 Male, age 80, both hemispheres 224.0
2299 Female, age 85, both hemispheres 182.4
2627 Male, age 74, both hemispheres 144.9
Nucleus raphe magnus
nTPM: 116.8
2328 Male, age 80, both hemispheres 150.9
2459 Female, age 91, both hemispheres 138.7
2051 Male, age 76, both hemispheres 135.0
2455 Male, age 74, both hemispheres 103.0
2172 Female, age 85, both hemispheres 92.5
2160 Male, age 61, both hemispheres 80.6
Nucleus raphe obscurus
nTPM: 148.2
2845 Female, age 85, midline 165.3
2800 Male, age 61, midline 142.1
2142 Male, age 76, midline 137.3
Nucleus raphe pallidus
nTPM: 128.3
2145 Male, age 76, midline 159.3
2183 Male, age 80, midline 124.5
1924 Male, age 61, midline 101.2
Nucleus tractus solitarii
nTPM: 85.2
2191 Female, age 85, both hemispheres 97.1
2307 Male, age 80, both hemispheres 96.6
2656 Male, age 76, both hemispheres 80.2
2144 Female, age 91, right hemisphere 66.9
Paramedian reticular nucleus
nTPM: 123.5
2052 Male, age 76, both hemispheres 154.0
2313 Male, age 61, both hemispheres 120.9
2050 Female, age 85, both hemispheres 115.6
2057 Male, age 80, both hemispheres 103.7
Parvicellular reticular nuclei
nTPM: 123.0
2095 Male, age 76, both hemispheres 136.1
2558 Male, age 74, both hemispheres 120.3
2119 Male, age 80, both hemispheres 112.5
Parvicellular reticular nuclei, medullary
nTPM: 124.3
2181 Male, age 80, left hemisphere 133.0
2189 Female, age 91, both hemispheres 125.4
2091 Female, age 85, both hemispheres 114.4
Pedunculopontine tegmental nucleus
nTPM: 115.8
2338 Male, age 61, both hemispheres 134.8
2334 Male, age 80, both hemispheres 121.1
1921 Female, age 85, both hemispheres 91.4
Peritrigeminal nucleus
nTPM: 114.2
2179 Male, age 61, both hemispheres 125.7
2136 Male, age 76, both hemispheres 112.9
2067 Female, age 85, both hemispheres 104.2
Pontine nuclei
nTPM: 127.5
2319 Female, age 91, both hemispheres 183.2
1968 Male, age 76, left hemisphere 147.7
2115 Male, age 80, left hemisphere 144.6
2454 Male, age 74, left hemisphere 137.3
2109 Female, age 72, unknown 120.6
1863 Male, age 55, unknown 110.8
2787 Female, age 85, both hemispheres 99.0
2727 Male, age 61, right hemisphere 76.4
Pontine raphe nucleus
nTPM: 100.1
2853 Male, age 76, midline 101.6
2122 Female, age 85, midline 98.7
Posteroventral cochlear nucleus
nTPM: 162.3
2135 Female, age 91, both hemispheres 232.4
2341 Male, age 80, both hemispheres 181.7
2371 Male, age 61, both hemispheres 146.9
2070 Male, age 76, both hemispheres 141.1
2752 Female, age 85, both hemispheres 109.5
Prepositus hypoglossal nucleus
nTPM: 100.1
2855 Female, age 85, right hemisphere 111.4
2086 Male, age 80, both hemispheres 88.8
Principal sensory trigeminal nucleus
nTPM: 126.2
2367 Female, age 91, left hemisphere 177.6
2324 Male, age 76, both hemispheres 135.5
2008 Male, age 80, left hemisphere 99.5
2158 Male, age 61, both hemispheres 92.4
Reticular pontine nucleus, caudal
nTPM: 146.4
2457 Female, age 91, both hemispheres 170.8
2559 Male, age 74, both hemispheres 145.7
2092 Male, age 76, both hemispheres 139.2
2332 Male, age 80, right hemisphere 129.6
Reticular pontine nucleus, oral
nTPM: 139.6
2366 Female, age 91, both hemispheres 227.4
2167 Male, age 76, both hemispheres 133.6
1939 Male, age 80, both hemispheres 122.6
2012 Female, age 85, both hemispheres 111.1
2361 Male, age 74, both hemispheres 103.2
Reticulotegmental nucleus
nTPM: 128.4
2452 Male, age 74, both hemispheres 137.7
2322 Female, age 91, both hemispheres 136.7
2333 Male, age 80, both hemispheres 130.5
2325 Male, age 76, both hemispheres 108.6
Spinal trigeminal nucleus, caudal
nTPM: 143.3
2308 Male, age 80, both hemispheres 169.4
2312 Male, age 61, both hemispheres 152.2
2642 Male, age 74, both hemispheres 151.5
2390 Female, age 91, both hemispheres 127.0
2447 Male, age 76, both hemispheres 116.4
Spinal trigeminal nucleus, interpolar
nTPM: 122.3
2389 Female, age 91, both hemispheres 145.7
2625 Male, age 61, both hemispheres 134.5
2033 Male, age 80, both hemispheres 124.7
2386 Female, age 85, both hemispheres 120.6
2066 Male, age 76, right hemisphere 85.8
Spinal trigeminal nucleus, oral
nTPM: 111.2
2164 Male, age 80, both hemispheres 130.8
1978 Male, age 76, both hemispheres 121.5
2737 Female, age 85, both hemispheres 81.3
Spinal vestibular nucleus
nTPM: 152.9
2796 Male, age 61, both hemispheres 180.0
2806 Female, age 85, both hemispheres 161.7
2748 Male, age 76, both hemispheres 157.6
2384 Male, age 74, both hemispheres 148.9
2186 Female, age 91, both hemispheres 141.7
2780 Male, age 80, both hemispheres 127.7
Subcoeruleus area
nTPM: 122.6
2369 Female, age 85, left hemisphere 139.9
2089 Male, age 76, left hemisphere 133.9
2451 Male, age 74, both hemispheres 124.6
1958 Male, age 80, both hemispheres 111.3
2323 Female, age 91, left hemisphere 103.2
Superior olive
nTPM: 138.0
2561 Female, age 91, both hemispheres 176.7
2020 Male, age 76, both hemispheres 165.5
2329 Male, age 80, right hemisphere 148.1
1875 Female, age 85, both hemispheres 106.7
2364 Male, age 74, right hemisphere 93.1
Superior vestibular nucleus
nTPM: 93.4
2015 Male, age 80, both hemispheres 110.0
2383 Male, age 74, both hemispheres 87.4
2061 Male, age 76, both hemispheres 82.9
Ventral medullary reticular nucleus
nTPM: 141.1
2060 Male, age 76, both hemispheres 143.3
2372 Male, age 61, both hemispheres 138.8
Ventral periolivary nuclei
nTPM: 136.6
2023 Male, age 76, both hemispheres 171.4
2794 Female, age 91, left hemisphere 150.5
2165 Male, age 80, both hemispheres 128.3
2130 Female, age 85, both hemispheres 96.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 126.1
2118 Male, age 80, both hemispheres 157.5
2180 Male, age 61, both hemispheres 128.2
2302 Female, age 91, both hemispheres 127.2
1986 Male, age 76, both hemispheres 110.7
2741 Female, age 85, both hemispheres 107.1
Ventrolateral tegmental area, A5 NE cell group
nTPM: 129.5
2840 Female, age 85, both hemispheres 144.5
2161 Male, age 80, both hemispheres 133.4
2359 Male, age 61, both hemispheres 132.3
1959 Male, age 76, both hemispheres 131.3
2456 Female, age 91, both hemispheres 126.8
2449 Male, age 74, both hemispheres 108.7

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 451.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 427.9
FF:10182-103D2 60 years, female 504.9
FF:10165-103B3 76 years, female 350.9
Medulla oblongata
Scaled Tags Per Million: 240.0
FF:10155-103A2 76 years, female 298.2
FF:10038-101F2 18-64 years, mixed 223.5
FF:10174-103C3 60 years, female 198.2
Pons
Scaled Tags Per Million: 451.4
FF:10033-101E6 18-54 years, mixed 451.4

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 95.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 95.5
Samples: 4

Max nTPM: 107.0
Min nTPM: 80.1
Sample A Female 106.7
Sample B Female 80.1
Sample C Male 88.0
Sample D Male 107.0
Pons
nTPM: 77.5
Samples: 4

Max nTPM: 89.0
Min nTPM: 68.5
Sample A Female 68.5
Sample B Female 73.8
Sample C Male 78.8
Sample D Male 89.0

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 23.1
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 23.1
Samples: 4

Max nTPM: 24.0
Min nTPM: 20.9
Sample A Male 23.9
Sample B Male 24.0
Sample C Female 20.9
Sample D Female 23.6

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 4.6
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 3.9
322956 Antisense, RP_040609_01_A09, Mouse strain C57BL/6J (56 days, male) 3.9
275675 Antisense, RP_040609_01_A09, Mouse strain C57BL/6J (56 days, male) 0.4
Pons
Expression energy: 4.6
322956 Antisense, RP_040609_01_A09, Mouse strain C57BL/6J (56 days, male) 4.6
275675 Antisense, RP_040609_01_A09, Mouse strain C57BL/6J (56 days, male) 0.6

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