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C11orf96
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:126.4 nTPM
HPA:24.7 nTPM
GTEx:126.4 nTPM
FANTOM5:260.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA038843
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.7
overview
Male, age 65
Small intestine sample 232
nTPM: 12.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 20.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 26.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 39

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 126.4
Samples: 187

Max nTPM: 1174.1
Min nTPM: 13.9
Std nTPM: 151.1
Median nTPM: 74.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1174.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 762.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 726.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 651.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 576.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 508.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 477.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 457.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 451.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 428.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 393.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 355.8
GTEX-1192X-2526-SM-59868 50-59 years, male 354.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 350.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 347.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 342.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 337.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 336.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 327.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 317.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 292.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 283.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 276.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 258.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 220.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 217.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 205.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 202.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 201.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 201.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 198.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 197.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 194.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 192.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 191.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 191.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 186.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 185.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 180.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 172.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 167.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 160.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 145.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 142.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 140.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 133.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 133.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 132.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 126.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 120.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 118.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 116.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 114.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 112.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 111.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 110.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 107.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 107.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 107.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 105.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 104.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 103.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 102.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 101.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 101.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 101.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 101.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 99.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 98.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 97.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 95.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 95.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 91.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 90.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 90.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 90.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 88.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 87.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 87.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 87.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 87.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 85.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 85.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 84.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 84.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 83.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 80.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 80.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 78.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 78.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 77.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 76.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 76.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 74.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 74.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 73.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 73.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 70.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 70.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 69.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 69.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 69.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 67.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 66.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 62.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 61.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 60.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 60.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 60.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 60.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 59.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 59.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 59.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 58.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 56.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 55.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 54.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 54.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 53.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 52.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 52.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 52.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 51.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 51.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 51.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 50.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 50.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 50.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 49.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 49.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 48.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 48.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 48.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 48.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 48.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 47.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 46.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 45.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 45.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 44.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 43.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 43.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 42.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 42.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 42.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 41.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 39.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 39.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 39.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 39.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 39.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 39.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 37.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 36.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 36.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 36.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 35.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 35.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 34.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 34.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 34.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 32.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 32.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 32.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 31.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 30.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 30.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 30.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 30.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 29.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 29.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 29.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 29.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 29.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 28.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 28.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 27.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 27.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 26.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 26.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 25.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 23.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 23.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 21.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 21.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 19.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 13.9
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

260.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 260.3
FF:10024-101D6 15,40,85 years, mixed 260.3

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