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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:728.3 nTPM
FANTOM5:31.2 Scaled Tags Per Million
Pig:391.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA047183
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

728.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 728.3
Samples: 246

Max nTPM: 1543.4
Min nTPM: 306.4
Std nTPM: 189.0
Median nTPM: 702.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1543.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1353.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1328.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1214.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1207.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1179.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1164.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1152.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1151.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1125.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1115.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1104.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1104.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1084.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1040.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1035.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1031.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1028.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1027.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 1012.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1004.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 992.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 969.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 965.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 963.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 956.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 952.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 945.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 943.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 942.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 930.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 929.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 919.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 912.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 909.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 907.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 905.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 897.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 896.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 891.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 891.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 891.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 890.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 888.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 887.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 886.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 882.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 881.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 880.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 873.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 870.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 866.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 863.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 857.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 857.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 855.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 849.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 848.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 840.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 837.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 831.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 827.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 823.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 823.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 818.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 815.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 815.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 813.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 812.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 811.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 809.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 807.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 807.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 807.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 806.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 805.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 805.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 805.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 798.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 796.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 788.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 786.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 785.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 785.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 780.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 779.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 778.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 776.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 775.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 768.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 768.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 762.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 760.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 757.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 755.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 755.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 755.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 755.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 754.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 750.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 750.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 750.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 748.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 745.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 743.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 742.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 739.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 737.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 735.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 734.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 734.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 729.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 728.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 728.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 724.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 724.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 719.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 716.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 711.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 710.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 709.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 703.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 702.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 701.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 700.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 700.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 699.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 693.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 690.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 688.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 685.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 681.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 681.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 679.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 679.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 674.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 673.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 671.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 671.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 669.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 669.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 668.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 667.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 666.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 665.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 664.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 661.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 658.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 658.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 658.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 656.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 655.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 652.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 650.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 648.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 648.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 647.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 647.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 642.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 639.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 637.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 637.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 636.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 632.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 630.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 629.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 625.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 623.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 620.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 618.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 616.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 615.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 614.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 613.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 610.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 609.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 604.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 603.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 601.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 598.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 593.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 593.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 592.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 591.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 591.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 588.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 588.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 587.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 586.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 583.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 581.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 579.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 575.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 573.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 571.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 570.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 568.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 564.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 564.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 564.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 563.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 561.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 561.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 561.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 560.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 560.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 558.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 555.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 552.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 551.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 545.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 545.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 540.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 534.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 530.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 527.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 525.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 520.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 517.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 515.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 512.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 510.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 505.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 505.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 499.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 495.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 490.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 487.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 486.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 486.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 481.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 480.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 479.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 473.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 469.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 464.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 463.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 447.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 446.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 439.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 423.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 421.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 412.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 407.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 385.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 306.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

31.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 31.2
FF:10164-103B2 76 years, female 31.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

391.7
Pig sample Sample description nTPM
Caudate
nTPM: 391.7
Samples: 4

Max nTPM: 430.9
Min nTPM: 351.0
Sample A Female 430.9
Sample B Female 383.9
Sample C Male 400.9
Sample D Male 351.0

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