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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:908.9 nTPM
HPA:772.9 nTPM
GTEx:908.9 nTPM
FANTOM5:54.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA047183
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

772.9
overview
Male, age 65
Small intestine sample 232
nTPM: 780.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 801.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 744.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 765.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

908.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 908.9
Samples: 187

Max nTPM: 1925.0
Min nTPM: 549.4
Std nTPM: 209.0
Median nTPM: 880.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1925.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1771.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1670.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1368.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1300.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1293.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1270.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1267.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1255.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1236.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1222.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1214.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1207.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1205.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1195.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1187.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1187.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 1156.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1152.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1148.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1143.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1141.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1140.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1122.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1107.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1104.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1101.9
GTEX-1192X-2526-SM-59868 50-59 years, male 1093.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1077.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1076.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1070.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1066.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1064.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1063.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1059.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1059.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1052.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1050.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1048.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1048.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1044.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1044.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1041.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1041.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1039.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1029.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1028.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1027.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1026.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1025.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1018.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1017.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1016.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1015.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 1012.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1011.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1006.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1005.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1001.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 997.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 985.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 985.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 985.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 983.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 980.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 979.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 977.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 974.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 969.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 966.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 963.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 962.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 952.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 952.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 950.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 950.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 948.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 938.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 937.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 931.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 930.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 927.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 926.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 924.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 922.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 921.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 916.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 904.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 896.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 893.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 889.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 886.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 885.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 880.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 878.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 877.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 874.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 872.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 868.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 862.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 860.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 859.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 849.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 848.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 845.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 840.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 838.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 835.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 833.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 831.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 831.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 830.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 824.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 824.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 824.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 823.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 821.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 818.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 816.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 812.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 811.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 807.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 799.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 797.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 794.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 789.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 787.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 783.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 782.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 781.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 780.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 778.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 774.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 771.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 771.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 769.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 768.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 765.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 763.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 761.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 761.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 760.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 759.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 756.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 755.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 755.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 754.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 752.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 752.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 742.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 740.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 739.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 738.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 735.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 734.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 729.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 723.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 718.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 717.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 712.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 711.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 700.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 700.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 697.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 688.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 687.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 679.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 678.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 673.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 667.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 665.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 660.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 650.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 628.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 627.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 622.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 617.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 611.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 603.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 602.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 593.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 591.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 583.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 578.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 571.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 569.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 549.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

54.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 54.0
FF:10024-101D6 15,40,85 years, mixed 54.0

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