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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:325.4 nTPM
HPA Brain:219.2 nTPM
GTEx:325.4 nTPM
FANTOM5:157.6 Scaled Tags Per Million
Pig:135.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

219.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 168.3
1981 Female, age 72, midline 194.2
2816 Male, age 47, midline 186.0
2194 Female, age 79, both hemispheres 170.3
2048 Male, age 55, midline 152.6
2565 Male, age 75, midline 138.2
Cervical spinal cord, dorsal horn
nTPM: 191.0
2296 Male, age 66, both hemispheres 340.3
2173 Female, age 72, unknown 297.4
2069 Male, age 47, both hemispheres 171.3
1877 Male, age 55, unknown 141.9
2297 Male, age 75, both hemispheres 102.1
2721 Male, age 90, both hemispheres 93.3
Cervical spinal cord, ventral horn
nTPM: 219.2
2480 Male, age 75, both hemispheres 235.8
2820 Female, age 79, both hemispheres 233.8
2068 Male, age 55, unknown 232.4
2098 Female, age 72, unknown 224.7
2295 Male, age 66, both hemispheres 201.7
2809 Male, age 90, both hemispheres 186.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

325.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 325.4
Samples: 159

Max nTPM: 878.0
Min nTPM: 51.2
Std nTPM: 156.2
Median nTPM: 298.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 878.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 805.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 724.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 686.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 679.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 657.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 618.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 616.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 608.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 582.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 564.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 560.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 549.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 545.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 536.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 534.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 522.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 518.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 514.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 509.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 507.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 496.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 491.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 491.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 491.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 487.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 485.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 478.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 476.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 472.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 464.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 453.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 449.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 444.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 438.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 436.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 433.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 432.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 432.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 423.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 419.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 416.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 409.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 404.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 403.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 398.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 398.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 398.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 395.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 390.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 387.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 379.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 374.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 371.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 370.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 370.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 370.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 368.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 368.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 368.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 366.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 360.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 358.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 355.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 352.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 350.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 347.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 342.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 342.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 338.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 333.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 332.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 332.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 319.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 318.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 313.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 310.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 310.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 305.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 298.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 295.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 293.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 291.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 289.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 286.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 285.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 284.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 280.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 276.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 276.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 274.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 273.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 269.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 267.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 264.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 261.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 256.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 253.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 249.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 248.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 247.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 245.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 243.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 242.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 241.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 238.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 238.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 233.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 230.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 228.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 227.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 226.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 219.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 218.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 218.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 217.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 215.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 213.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 212.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 211.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 208.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 202.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 199.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 199.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 195.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 193.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 193.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 191.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 191.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 187.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 186.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 182.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 180.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 175.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 173.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 171.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 166.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 165.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 153.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 153.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 152.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 146.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 146.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 139.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 130.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 129.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 123.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 122.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 118.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 118.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 112.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 110.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 102.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 92.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 76.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 69.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 63.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 57.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 51.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

157.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 157.6
FF:10181-103D1 60 years, female 217.3
FF:10159-103A6 76 years, female 97.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 108.5
Samples: 4

Max nTPM: 138.4
Min nTPM: 87.2
Sample A Female 138.4
Sample B Female 103.5
Sample C Male 87.2
Sample D Male 104.7
Ventral spinal cord
nTPM: 135.2
Samples: 4

Max nTPM: 172.1
Min nTPM: 108.9
Sample A Female 172.1
Sample B Female 108.9
Sample C Male 118.8
Sample D Male 141.0

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