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SHISA7
HPA
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PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SHISA7
Synonyms
Gene descriptioni

Full gene name according to HGNC.

Shisa family member 7
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 19
Cytoband q13.42
Chromosome location (bp) 55428740 - 55443300
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

2
Ensembl ENSG00000187902 (version 109)
Entrez gene 729956
HGNC HGNC:35409
UniProt A6NL88 (UniProt - Evidence at transcript level)
neXtProt NX_A6NL88
GeneCards SHISA7
Antibodypedia SHISA7 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Transmembrane protein that regulates gamma-aminobutyric acid type A receptor (GABA(A)R) trafficking, channel deactivation kinetics and pharmacology, necessary for fast inhibitory transmission in the brain. Enhances the action of benzodiazepine, a primary GABA(A)Rs target drug, in the brain. May affect channel kinetics of AMPA-type glutamate receptors (AMPAR), the brain's main excitatory neurotransmitter, necessary for synaptic hippocampal plasticity, and memory recall. May regulate the induction and maintenance of long-term potentiation at Schaffer collaterals/CA3-CA1 excitatory synapses.... show less
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable GABA receptor binding activity and ionotropic glutamate receptor binding activity. Predicted to be involved in several processes, including gamma-aminobutyric acid receptor clustering; regulation of signaling receptor activity; and regulation of synaptic plasticity. Predicted to be located in asymmetric, glutamatergic, excitatory synapse. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in glutamatergic synapse; postsynaptic density; and synaptic membrane. Predicted to be integral component of postsynaptic specialization membrane. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SHISA7-201
ENSP00000365503
ENST00000376325
A6NL88
[Direct mapping] Protein shisa-7
Show all
Transporters
   Accessory Factors Involved in Transport
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0007214 [gamma-aminobutyric acid signaling pathway]
GO:0007613 [memory]
GO:0014069 [postsynaptic density]
GO:0016020 [membrane]
GO:0032281 [AMPA glutamate receptor complex]
GO:0032591 [dendritic spine membrane]
GO:0035255 [ionotropic glutamate receptor binding]
GO:0045202 [synapse]
GO:0045211 [postsynaptic membrane]
GO:0048172 [regulation of short-term neuronal synaptic plasticity]
GO:0050811 [GABA receptor binding]
GO:0097112 [gamma-aminobutyric acid receptor clustering]
GO:0098839 [postsynaptic density membrane]
GO:0098962 [regulation of postsynaptic neurotransmitter receptor activity]
GO:0098985 [asymmetric, glutamatergic, excitatory synapse]
GO:0099634 [postsynaptic specialization membrane]
GO:0106040 [regulation of GABA-A receptor activity]
GO:1900273 [positive regulation of long-term synaptic potentiation]
GO:1904717 [regulation of AMPA glutamate receptor clustering]
GO:2000311 [regulation of AMPA receptor activity]
Show all
538 aa
56.2 kDa
Yes 1
SHISA7-202
ENSP00000401307
ENST00000416792
H7C1N4
[Direct mapping] Protein shisa-7
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
560 aa
58.7 kDa
Yes 1

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