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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:148.3 nTPM
HPA Brain:268.1 nTPM
GTEx:148.3 nTPM
FANTOM5:86.9 Scaled Tags Per Million
Pig:97.0 nTPM
Mouse:647.7 nTPM
Allen mouse:31.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

268.1
Sample id Sample description nTPM
Amygdala
nTPM: 190.9
2814 Male, age 76, right hemisphere 292.1
1987 Female, age 91, left hemisphere 211.6
2517 Female, age 94, left hemisphere 205.3
2514 Male, age 75, right hemisphere 133.0
2695 Female, age 67, right hemisphere 112.8
Basal amygdala
nTPM: 240.0
2685 Female, age 94, left hemisphere 324.3
2243 Female, age 91, right hemisphere 300.3
1955 Male, age 76, both hemispheres 239.0
2110 Male, age 80, left hemisphere 211.1
2827 Female, age 67, right hemisphere 182.8
2609 Male, age 75, right hemisphere 182.5
Central amygdala
nTPM: 268.1
2826 Female, age 94, left hemisphere 445.1
1905 Male, age 76, both hemispheres 250.0
2701 Female, age 91, right hemisphere 248.4
2239 Male, age 80, left hemisphere 215.8
2515 Male, age 75, right hemisphere 181.4
Corticomedial amygdala
nTPM: 221.8
2242 Female, age 91, right hemisphere 297.4
2829 Male, age 80, left hemisphere 273.8
2429 Female, age 94, left hemisphere 223.3
2535 Female, age 67, right hemisphere 197.2
2240 Male, age 76, both hemispheres 175.7
2428 Male, age 75, right hemisphere 163.3
Lateral amygdala
nTPM: 239.7
2534 Female, age 94, left hemisphere 484.6
1883 Male, age 76, both hemispheres 247.3
2255 Female, age 91, right hemisphere 224.8
2256 Male, age 80, left hemisphere 220.3
2830 Female, age 67, right hemisphere 132.9
2516 Male, age 75, right hemisphere 128.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 148.3
Samples: 152

Max nTPM: 552.4
Min nTPM: 13.8
Std nTPM: 82.2
Median nTPM: 130.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 552.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 432.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 395.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 369.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 308.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 305.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 289.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 289.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 282.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 276.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 264.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 262.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 261.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 260.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 251.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 250.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 245.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 244.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 243.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 242.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 240.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 237.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 235.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 233.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 224.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 219.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 216.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 215.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 213.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 213.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 213.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 210.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 205.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 205.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 204.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 201.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 198.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 198.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 195.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 189.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 188.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 188.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 186.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 179.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 179.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 171.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 171.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 170.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 169.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 168.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 167.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 167.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 165.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 159.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 158.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 157.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 154.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 153.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 149.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 149.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 148.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 148.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 146.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 145.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 144.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 143.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 143.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 143.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 141.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 140.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 137.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 135.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 133.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 131.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 130.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 130.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 130.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 130.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 130.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 127.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 126.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 124.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 123.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 122.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 121.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 118.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 117.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 115.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 114.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 114.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 113.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 112.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 111.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 110.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 107.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 107.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 107.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 106.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 105.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 105.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 104.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 102.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 101.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 100.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 99.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 98.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 95.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 94.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 93.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 92.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 92.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 90.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 88.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 87.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 87.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 86.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 86.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 85.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 84.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 82.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 81.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 81.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 80.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 80.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 79.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 78.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 78.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 77.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 77.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 77.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 76.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 74.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 72.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 70.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 70.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 69.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 69.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 64.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 62.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 61.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 56.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 55.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 53.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 52.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 52.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 46.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 40.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 39.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 39.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 25.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 20.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 13.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

86.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 86.9
FF:10151-102I7 76 years, female 86.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.0
Pig sample Sample description nTPM
Amygdala
nTPM: 97.0
Samples: 4

Max nTPM: 136.4
Min nTPM: 66.8
Sample A Female 136.4
Sample B Female 66.8
Sample C Male 94.5
Sample D Male 90.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

647.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 647.7
Samples: 4

Max nTPM: 687.1
Min nTPM: 616.8
Sample A Male 687.1
Sample B Male 616.8
Sample C Female 663.7
Sample D Female 623.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

31.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 31.5
564653 Antisense, RP_040826_01_B10, Mouse strain C57BL/6J (56 days, male) 31.7
70616006 Antisense, RP_050725_01_D09, Mouse strain C57BL/6J (56 days, male) 31.3

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