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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:145.4 nTPM
HPA Brain:157.5 nTPM
GTEx:145.4 nTPM
FANTOM5:215.4 Scaled Tags Per Million
Pig:127.1 nTPM
Mouse:438.2 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.5
Sample id Sample description nTPM
Amygdala
nTPM: 157.5
1987 Female, age 91, left hemisphere 194.5
2814 Male, age 76, right hemisphere 180.0
2517 Female, age 94, left hemisphere 163.7
2514 Male, age 75, right hemisphere 134.7
2695 Female, age 67, right hemisphere 114.8
Basal amygdala
nTPM: 122.0
2110 Male, age 80, left hemisphere 141.7
2609 Male, age 75, right hemisphere 139.3
1955 Male, age 76, both hemispheres 133.9
2243 Female, age 91, right hemisphere 131.8
2685 Female, age 94, left hemisphere 117.7
2827 Female, age 67, right hemisphere 67.3
Central amygdala
nTPM: 148.0
1905 Male, age 76, both hemispheres 182.3
2239 Male, age 80, left hemisphere 153.7
2515 Male, age 75, right hemisphere 153.1
2701 Female, age 91, right hemisphere 129.7
2826 Female, age 94, left hemisphere 121.1
Corticomedial amygdala
nTPM: 131.2
2242 Female, age 91, right hemisphere 153.0
2829 Male, age 80, left hemisphere 137.4
2428 Male, age 75, right hemisphere 136.1
2429 Female, age 94, left hemisphere 134.9
2240 Male, age 76, both hemispheres 126.2
2535 Female, age 67, right hemisphere 99.2
Lateral amygdala
nTPM: 118.2
1883 Male, age 76, both hemispheres 152.0
2534 Female, age 94, left hemisphere 150.4
2516 Male, age 75, right hemisphere 122.9
2255 Female, age 91, right hemisphere 112.8
2256 Male, age 80, left hemisphere 105.4
2830 Female, age 67, right hemisphere 66.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 145.4
Samples: 152

Max nTPM: 416.3
Min nTPM: 67.4
Std nTPM: 56.8
Median nTPM: 135.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 416.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 416.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 363.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 279.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 273.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 270.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 265.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 259.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 251.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 251.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 230.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 208.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 204.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 203.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 201.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 199.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 197.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 197.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 196.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 192.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 192.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 187.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 187.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 186.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 185.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 183.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 182.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 181.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 179.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 178.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 172.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 172.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 171.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 170.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 170.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 169.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 169.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 168.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 167.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 166.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 163.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 163.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 162.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 162.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 161.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 161.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 160.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 157.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 157.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 155.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 154.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 153.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 152.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 151.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 149.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 148.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 148.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 148.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 147.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 147.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 145.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 145.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 144.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 143.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 143.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 143.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 142.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 141.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 141.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 140.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 139.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 138.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 137.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 135.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 135.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 135.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 135.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 134.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 134.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 134.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 132.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 132.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 132.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 132.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 131.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 129.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 127.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 126.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 125.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 124.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 124.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 124.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 123.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 123.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 123.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 122.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 120.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 119.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 119.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 118.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 117.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 117.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 116.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 116.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 115.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 115.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 114.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 113.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 112.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 110.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 110.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 109.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 108.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 108.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 107.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 107.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 106.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 106.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 104.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 104.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 103.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 102.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 102.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 101.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 101.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 100.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 100.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 98.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 97.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 97.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 97.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 96.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 94.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 93.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 92.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 90.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 89.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 88.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 88.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 86.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 85.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 84.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 83.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 83.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 79.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 75.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 75.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 75.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 71.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 71.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 70.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 67.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

215.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 215.4
FF:10151-102I7 76 years, female 215.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.1
Pig sample Sample description nTPM
Amygdala
nTPM: 127.1
Samples: 4

Max nTPM: 194.8
Min nTPM: 88.9
Sample A Female 194.8
Sample B Female 88.9
Sample C Male 111.0
Sample D Male 113.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

438.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 438.2
Samples: 4

Max nTPM: 471.8
Min nTPM: 397.1
Sample A Male 471.8
Sample B Male 453.2
Sample C Female 397.1
Sample D Female 430.7

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