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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:161.7 nTPM
HPA:161.7 nTPM
GTEx:147.9 nTPM
FANTOM5:490.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043640Antibody HPA046280Antibody CAB010880
Glandular cells Not detectedMediumLow






SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

161.7
overview
Male, age 65
Small intestine sample 232
nTPM: 139.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 151
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 167.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 189.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 147.9
Samples: 187

Max nTPM: 337.7
Min nTPM: 24.8
Std nTPM: 75.4
Median nTPM: 137.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 337.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 336.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 323.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 323.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 319.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 308.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 306.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 298.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 297.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 294.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 292.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 290.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 289.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 287.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 278.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 277.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 269.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 267.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 264.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 263.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 261.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 259.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 257.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 250.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 246.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 245.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 242.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 234.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 232.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 231.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 230.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 225.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 222.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 220.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 219.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 217.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 216.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 216.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 214.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 214.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 212.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 211.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 208.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 201.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 199.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 196.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 194.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 192.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 190.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 189.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 185.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 181.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 180.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 180.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 179.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 179.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 178.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 175.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 175.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 174.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 173.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 172.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 170.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 169.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 164.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 163.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 163.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 163.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 159.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 158.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 158.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 157.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 156.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 156.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 154.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 153.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 152.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 152.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 150.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 150.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 149.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 147.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 146.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 146.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 143.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 143.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 142.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 142.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 141.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 140.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 138.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 137.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 137.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 137.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 134.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 133.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 131.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 131.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 131.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 130.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 129.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 129.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 128.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 128.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 128.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 127.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 126.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 125.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 125.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 124.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 121.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 120.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 114.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 113.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 113.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 110.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 110.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 109.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 109.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 108.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 108.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 107.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 106.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 104.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 100.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 99.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 98.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 98.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 96.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 95.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 95.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 93.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 91.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 90.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 90.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 90.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 90.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 90.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 89.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 89.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 86.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 85.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 85.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 84.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 84.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 83.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 83.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 83.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 82.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 80.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 79.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 79.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 76.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 76.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 73.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 70.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 67.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 67.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 66.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 65.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 65.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 65.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 63.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 63.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 63.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 62.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 62.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 62.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 60.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 59.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 59.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 59.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 58.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 56.8
GTEX-1192X-2526-SM-59868 50-59 years, male 56.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 53.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 51.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 49.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 47.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 45.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 44.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 40.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 37.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 36.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 31.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 29.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 24.8
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

490.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 490.7
FF:10024-101D6 15,40,85 years, mixed 490.7

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