MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.1 nTPM
HPA Brain:28.5 nTPM
GTEx:10.1 nTPM
FANTOM5:26.7 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 28.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.2
2219 Male, age 76, both hemispheres 31.1
1830 Male, age 51, unknown 29.6
2411 Female, age 72, unknown 28.6
1833 Male, age 53, unknown 27.9
1870 Female, age 42, unknown 27.0
2828 Female, age 72, unknown 26.6
1827 Male, age 72, unknown 25.0
2019 Male, age 18, unknown 24.7
2666 Male, age 74, left hemisphere 22.1
2586 Male, age 75, left hemisphere 19.2
Dorsal raphe nucleus
nTPM: 27.9
2750 Male, age 76, both hemispheres 31.1
2016 Female, age 72, unknown 29.5
2047 Male, age 72, unknown 28.3
1828 Male, age 53, unknown 26.3
2298 Female, age 72, unknown 24.5
Inferior colliculus
nTPM: 26.3
1890 Male, age 53, unknown 29.3
1848 Female, age 42, unknown 26.7
2097 Female, age 72, unknown 24.6
2849 Male, age 72, unknown 24.6
Median raphe nucleus
nTPM: 25.5
2220 Male, age 76, midline 25.5
Periaquaductal grey, anterior
nTPM: 25.0
1947 Male, age 18, unknown 27.9
1795 Male, age 51, unknown 24.0
2502 Female, age 75, unknown 23.0
Periaquaductal grey, dorsal
nTPM: 28.5
1840 Male, age 53, unknown 29.3
2850 Male, age 76, both hemispheres 28.6
1831 Male, age 72, unknown 28.1
2464 Female, age 72, unknown 28.0
Periaquaductal grey, lateral
nTPM: 28.1
2140 Male, age 76, both hemispheres 32.0
2272 Male, age 74, both hemispheres 26.9
2053 Male, age 18, unknown 25.5
Pretectal area
nTPM: 26.1
2316 Male, age 76, right hemisphere 33.7
2667 Female, age 75, unknown 33.3
2273 Male, age 74, both hemispheres 29.6
2825 Male, age 18, unknown 28.0
2407 Male, age 75, both hemispheres 26.4
2224 Female, age 72, unknown 25.5
1815 Male, age 53, unknown 25.4
1944 Female, age 72, unknown 22.8
1817 Female, age 42, unknown 22.3
2007 Male, age 72, unknown 20.8
1816 Male, age 51, unknown 19.7
Red nucleus
nTPM: 27.7
2823 Male, age 76, right hemisphere 34.3
1865 Male, age 51, unknown 30.7
2725 Female, age 75, unknown 29.2
2503 Female, age 72, unknown 28.6
2769 Male, age 72, unknown 28.3
1954 Female, age 42, unknown 28.0
2588 Male, age 74, left hemisphere 27.5
2227 Male, age 72, unknown 26.6
1904 Male, age 53, unknown 25.9
2785 Male, age 18, unknown 25.4
1821 Female, age 72, unknown 25.1
2584 Male, age 75, left hemisphere 22.7
Substantia nigra
nTPM: 26.9
2241 Male, age 72, unknown 35.8
2409 Female, age 72, unknown 31.1
2699 Male, age 18, unknown 28.4
2590 Female, age 75, unknown 26.3
1889 Female, age 72, unknown 26.0
2583 Male, age 75, right hemisphere 25.9
1941 Male, age 53, unknown 24.8
1851 Male, age 51, unknown 24.7
2665 Male, age 74, both hemispheres 24.2
1916 Female, age 42, unknown 21.9
Superior colliculus
nTPM: 25.0
1895 Male, age 76, right hemisphere 30.3
1913 Female, age 42, unknown 27.7
1839 Male, age 51, unknown 27.5
1995 Male, age 72, unknown 25.6
2587 Male, age 74, left hemisphere 25.3
2087 Female, age 72, unknown 24.2
2261 Male, age 18, unknown 24.0
1796 Male, age 53, unknown 23.0
2664 Male, age 75, both hemispheres 23.0
2668 Female, age 75, unknown 19.9
Ventral tegmental area
nTPM: 26.3
2021 Male, age 53, unknown 28.3
1942 Male, age 51, unknown 27.4
2218 Male, age 76, both hemispheres 27.1
2223 Female, age 72, unknown 26.8
2410 Female, age 72, unknown 24.7
1915 Female, age 42, unknown 23.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.1
Samples: 139

Max nTPM: 20.9
Min nTPM: 3.8
Std nTPM: 2.8
Median nTPM: 9.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 20.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 17.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 16.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 15.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 15.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 14.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 14.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 14.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 14.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 14.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 14.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.7
FF:10158-103A5 76 years, female 26.7

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