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SLC4A5
HPA
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  • SLC4A5
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC4A5
Synonyms NBC4
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 4 member 5
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Cancer-related genes
Metabolic proteins
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 2
Cytoband p13.1
Chromosome location (bp) 74216242 - 74343416
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

11
Ensembl ENSG00000188687 (version 109)
Entrez gene 57835
HGNC HGNC:18168
UniProt Q9BY07 (UniProt - Evidence at transcript level)
neXtProt NX_Q9BY07
GeneCards SLC4A5
Antibodypedia SLC4A5 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Mediates sodium- and bicarbonate-dependent electrogenic sodium bicarbonate cotransport, with a Na(+):HCO3(-) stoichiometry varying from 1:2 to 1:3.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Anion exchange, Ion transport, Sodium transport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Sodium
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the sodium bicarbonate cotransporter (NBC) family, part of the bicarbonate transporter superfamily. Sodium bicarbonate cotransporters are involved in intracellular pH regulation and electroneural or electrogenic sodium bicarbonate transport. This protein is thought to be an integral membrane protein. Multiple transcript variants encoding different isoforms have been found for this gene, but the biological validity of some variants has not been determined. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC4A5-201
ENSP00000251768
ENST00000346834
Q9BY07
[Direct mapping] Electrogenic sodium bicarbonate cotransporter 4
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Cancer-related genes
   Mutated cancer genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0003014 [renal system process]
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006820 [anion transport]
GO:0008509 [anion transmembrane transporter activity]
GO:0008510 [sodium:bicarbonate symporter activity]
GO:0015698 [inorganic anion transport]
GO:0015701 [bicarbonate transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0035725 [sodium ion transmembrane transport]
GO:0050801 [ion homeostasis]
GO:0051453 [regulation of intracellular pH]
GO:0055085 [transmembrane transport]
GO:0098656 [anion transmembrane transport]
Show all
1137 aa
126.3 kDa
No >9
SLC4A5-202
ENSP00000351513
ENST00000358683
Q9BY07
[Direct mapping] Electrogenic sodium bicarbonate cotransporter 4
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Cancer-related genes
   Mutated cancer genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0003014 [renal system process]
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006820 [anion transport]
GO:0008509 [anion transmembrane transporter activity]
GO:0008510 [sodium:bicarbonate symporter activity]
GO:0015698 [inorganic anion transport]
GO:0015701 [bicarbonate transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0035725 [sodium ion transmembrane transport]
GO:0050801 [ion homeostasis]
GO:0051453 [regulation of intracellular pH]
GO:0055085 [transmembrane transport]
GO:0098656 [anion transmembrane transport]
Show all
1019 aa
113.4 kDa
No >9
SLC4A5-203
ENSP00000366859
ENST00000377632
Q9BY07
[Direct mapping] Electrogenic sodium bicarbonate cotransporter 4
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   9TM proteins predicted by MDM
Cancer-related genes
   Mutated cancer genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0003014 [renal system process]
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006820 [anion transport]
GO:0008509 [anion transmembrane transporter activity]
GO:0008510 [sodium:bicarbonate symporter activity]
GO:0015698 [inorganic anion transport]
GO:0015701 [bicarbonate transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0035725 [sodium ion transmembrane transport]
GO:0050801 [ion homeostasis]
GO:0051453 [regulation of intracellular pH]
GO:0055085 [transmembrane transport]
GO:0098656 [anion transmembrane transport]
Show all
1040 aa
115.2 kDa
No 9
SLC4A5-204
ENSP00000366861
ENST00000377634
Q9BY07
[Direct mapping] Electrogenic sodium bicarbonate cotransporter 4
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Cancer-related genes
   Mutated cancer genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0003014 [renal system process]
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006820 [anion transport]
GO:0008509 [anion transmembrane transporter activity]
GO:0008510 [sodium:bicarbonate symporter activity]
GO:0015698 [inorganic anion transport]
GO:0015701 [bicarbonate transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0035725 [sodium ion transmembrane transport]
GO:0050801 [ion homeostasis]
GO:0051453 [regulation of intracellular pH]
GO:0055085 [transmembrane transport]
GO:0098656 [anion transmembrane transport]
Show all
1137 aa
126.3 kDa
No >9
SLC4A5-205
ENSP00000377587
ENST00000394019
Q9BY07
[Direct mapping] Electrogenic sodium bicarbonate cotransporter 4
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Cancer-related genes
   Mutated cancer genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0002064 [epithelial cell development]
GO:0003014 [renal system process]
GO:0003073 [regulation of systemic arterial blood pressure]
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006820 [anion transport]
GO:0008509 [anion transmembrane transporter activity]
GO:0008510 [sodium:bicarbonate symporter activity]
GO:0010468 [regulation of gene expression]
GO:0015698 [inorganic anion transport]
GO:0015701 [bicarbonate transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0033326 [cerebrospinal fluid secretion]
GO:0035725 [sodium ion transmembrane transport]
GO:0048311 [mitochondrion distribution]
GO:0050801 [ion homeostasis]
GO:0051453 [regulation of intracellular pH]
GO:0055085 [transmembrane transport]
GO:0060041 [retina development in camera-type eye]
GO:0098656 [anion transmembrane transport]
Show all
1121 aa
124.6 kDa
No >9
SLC4A5-206
ENSP00000395804
ENST00000423644
Q9BY07
[Direct mapping] Electrogenic sodium bicarbonate cotransporter 4
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Cancer-related genes
   Mutated cancer genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0003014 [renal system process]
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006820 [anion transport]
GO:0008509 [anion transmembrane transporter activity]
GO:0008510 [sodium:bicarbonate symporter activity]
GO:0015698 [inorganic anion transport]
GO:0015701 [bicarbonate transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0035725 [sodium ion transmembrane transport]
GO:0050801 [ion homeostasis]
GO:0051453 [regulation of intracellular pH]
GO:0055085 [transmembrane transport]
GO:0098656 [anion transmembrane transport]
Show all
1121 aa
124.6 kDa
No >9
SLC4A5-208
ENSP00000414162
ENST00000432728
C9JNL6
[Direct mapping] Electrogenic sodium bicarbonate cotransporter 4
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutated cancer genes
Show all
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0006820 [anion transport]
GO:0008509 [anion transmembrane transporter activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0098656 [anion transmembrane transport]
Show all
122 aa
14.2 kDa
No 0
SLC4A5-209
ENSP00000399319
ENST00000436454
C9JW32
[Direct mapping] Electrogenic sodium bicarbonate cotransporter 4
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutated cancer genes
Show all
129 aa
14.5 kDa
No 0
SLC4A5-210
ENSP00000407550
ENST00000444570
C9JU12
[Direct mapping] Electrogenic sodium bicarbonate cotransporter 4
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutated cancer genes
Show all
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0006820 [anion transport]
GO:0016020 [membrane]
Show all
144 aa
16.4 kDa
No 0
SLC4A5-212
ENSP00000490265
ENST00000480696
A0A1B0GUV9
[Direct mapping] Electrogenic sodium bicarbonate cotransporter 4
Show all
Metabolic proteins
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   Phobius predicted secreted proteins
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutated cancer genes
Show all
71 aa
7.9 kDa
No 0
SLC4A5-214
ENSP00000490698
ENST00000637036
A0A1B0GVY3
[Direct mapping] Electrogenic sodium bicarbonate cotransporter 4
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Cancer-related genes
   Mutated cancer genes
   DeepTMHMM predicted membrane proteins
Show all
GO:0005452 [solute:inorganic anion antiporter activity]
GO:0006820 [anion transport]
GO:0015698 [inorganic anion transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
210 aa
24.4 kDa
No 3

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