MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.7 nTPM
HPA Brain:73.7 nTPM
GTEx:28.7 nTPM
FANTOM5:49.1 Scaled Tags Per Million
Pig:35.9 nTPM
Mouse:72.2 nTPM
Allen mouse:8.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 73.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.8
2586 Male, age 75, left hemisphere 98.4
2666 Male, age 74, left hemisphere 82.2
1827 Male, age 72, unknown 78.8
2828 Female, age 72, unknown 78.0
1870 Female, age 42, unknown 69.6
1833 Male, age 53, unknown 67.9
2019 Male, age 18, unknown 64.7
1830 Male, age 51, unknown 63.8
2411 Female, age 72, unknown 63.6
2219 Male, age 76, both hemispheres 61.0
Dorsal raphe nucleus
nTPM: 62.5
2047 Male, age 72, unknown 64.4
2298 Female, age 72, unknown 62.3
1828 Male, age 53, unknown 61.9
2016 Female, age 72, unknown 61.9
2750 Male, age 76, both hemispheres 61.7
Inferior colliculus
nTPM: 69.7
2849 Male, age 72, unknown 78.3
1848 Female, age 42, unknown 68.2
1890 Male, age 53, unknown 66.9
2097 Female, age 72, unknown 65.2
Median raphe nucleus
nTPM: 64.1
2220 Male, age 76, midline 64.1
Periaquaductal grey, anterior
nTPM: 71.5
2502 Female, age 75, unknown 72.5
1947 Male, age 18, unknown 71.3
1795 Male, age 51, unknown 70.7
Periaquaductal grey, dorsal
nTPM: 69.5
2850 Male, age 76, both hemispheres 72.8
1840 Male, age 53, unknown 72.4
1831 Male, age 72, unknown 67.5
2464 Female, age 72, unknown 65.3
Periaquaductal grey, lateral
nTPM: 65.6
2053 Male, age 18, unknown 72.5
2140 Male, age 76, both hemispheres 67.2
2272 Male, age 74, both hemispheres 57.0
Pretectal area
nTPM: 73.7
1816 Male, age 51, unknown 90.0
2407 Male, age 75, both hemispheres 81.2
1815 Male, age 53, unknown 79.1
1817 Female, age 42, unknown 77.2
2007 Male, age 72, unknown 76.7
1944 Female, age 72, unknown 76.2
2667 Female, age 75, unknown 71.9
2825 Male, age 18, unknown 71.9
2316 Male, age 76, right hemisphere 67.4
2224 Female, age 72, unknown 62.7
2273 Male, age 74, both hemispheres 56.6
Red nucleus
nTPM: 66.8
2584 Male, age 75, left hemisphere 84.1
2588 Male, age 74, left hemisphere 72.8
2785 Male, age 18, unknown 70.0
1865 Male, age 51, unknown 67.1
2503 Female, age 72, unknown 66.0
1904 Male, age 53, unknown 65.2
2725 Female, age 75, unknown 65.2
2769 Male, age 72, unknown 64.6
2823 Male, age 76, right hemisphere 62.9
1954 Female, age 42, unknown 62.8
2227 Male, age 72, unknown 61.1
1821 Female, age 72, unknown 59.4
Substantia nigra
nTPM: 65.3
2583 Male, age 75, right hemisphere 80.0
2665 Male, age 74, both hemispheres 77.5
1889 Female, age 72, unknown 69.2
2590 Female, age 75, unknown 67.4
1851 Male, age 51, unknown 62.1
1916 Female, age 42, unknown 61.9
2699 Male, age 18, unknown 60.7
1941 Male, age 53, unknown 59.3
2241 Male, age 72, unknown 57.7
2409 Female, age 72, unknown 57.4
Superior colliculus
nTPM: 73.7
2664 Male, age 75, both hemispheres 92.8
1796 Male, age 53, unknown 76.8
2261 Male, age 18, unknown 76.2
1913 Female, age 42, unknown 72.6
2668 Female, age 75, unknown 72.2
1839 Male, age 51, unknown 71.5
1995 Male, age 72, unknown 71.2
2087 Female, age 72, unknown 69.9
1895 Male, age 76, right hemisphere 68.6
2587 Male, age 74, left hemisphere 64.7
Ventral tegmental area
nTPM: 63.6
2223 Female, age 72, unknown 68.6
2021 Male, age 53, unknown 66.5
2218 Male, age 76, both hemispheres 65.0
1942 Male, age 51, unknown 62.6
1915 Female, age 42, unknown 62.5
2410 Female, age 72, unknown 56.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 28.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.7
Samples: 139

Max nTPM: 46.7
Min nTPM: 14.9
Std nTPM: 5.3
Median nTPM: 28.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 46.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 43.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 40.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 40.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 39.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 39.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 38.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 37.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 37.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 36.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 35.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 49.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.1
FF:10158-103A5 76 years, female 49.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 35.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.2
Samples: 4

Max nTPM: 34.5
Min nTPM: 27.8
Sample A Female 31.8
Sample B Female 27.8
Sample C Male 34.5
Sample D Male 30.8
Midbrain
nTPM: 35.8
Samples: 4

Max nTPM: 45.1
Min nTPM: 30.0
Sample A Female 30.0
Sample B Female 30.3
Sample C Male 45.1
Sample D Male 37.9
Periaqueductal gray
nTPM: 33.3
Samples: 3

Max nTPM: 35.8
Min nTPM: 31.1
Sample B Female 33.0
Sample C Male 35.8
Sample D Male 31.1
Superior colliculi
nTPM: 34.3
Samples: 4

Max nTPM: 39.6
Min nTPM: 26.2
Sample A Female 33.4
Sample B Female 26.2
Sample C Male 39.6
Sample D Male 38.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 72.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.2
Samples: 4

Max nTPM: 75.2
Min nTPM: 70.0
Sample A Male 70.0
Sample B Male 72.8
Sample C Female 75.2
Sample D Female 70.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.8
71656894 Antisense, RP_050927_04_E04, Mouse strain C57BL/6J (56 days, male) 8.8

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