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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:733.6 nTPM
GTEx:733.6 nTPM
FANTOM5:0.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA062568Antibody HPA067734
Squamous epithelial cells LowMedium





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

733.6
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 733.6
Samples: 156

Max nTPM: 4591.2
Min nTPM: 0.1
Std nTPM: 818.1
Median nTPM: 567.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 4591.2
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 3275.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 3103.3
GTEX-14PKU-1326-SM-6871B 40-49 years, female 3028.1
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 2389.2
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 2357.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2255.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 2016.5
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1925.3
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1823.4
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1818.5
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1810.2
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 1748.9
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1748.7
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1743.8
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1738.3
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1729.5
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1650.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1648.2
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1642.8
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1633.5
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1620.2
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1619.4
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1610.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1547.5
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1531.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1530.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1524.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1503.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1480.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1464.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1391.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 1390.5
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1380.7
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1372.4
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1361.4
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1355.7
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1321.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1312.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1284.0
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1250.7
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1247.3
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1223.3
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1206.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1199.1
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1188.9
GTEX-1C475-0526-SM-793AC 40-49 years, female 1185.9
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1176.9
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1150.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1144.6
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1112.6
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1104.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1098.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1088.7
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1080.7
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1064.2
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1060.4
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1047.7
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 972.5
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 969.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 966.8
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 966.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 885.1
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 870.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 849.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 820.2
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 763.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 715.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 711.9
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 687.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 666.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 661.0
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 644.1
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 642.1
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 634.4
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 621.7
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 612.8
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 580.3
GTEX-16NPV-2526-SM-6M483 50-59 years, female 554.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 532.7
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 478.0
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 455.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 344.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 322.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 314.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 297.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 259.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 242.2
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 213.9
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 199.3
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 198.9
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 156.6
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 129.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 114.0
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 81.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 70.9
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 62.9
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 62.8
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 28.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 27.7
GTEX-QCQG-1226-SM-48U23 50-59 years, female 23.8
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 18.0
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 16.9
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 9.9
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 9.1
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 7.9
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 7.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 4.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 3.5
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 2.7
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2.6
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 2.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 2.2
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 2.2
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1.9
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1.9
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1.8
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1.5
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1.5
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1.5
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1.3
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1.2
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1.1
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1.1
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 1.0
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1.0
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1.0
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 0.8
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 0.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 0.7
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 0.7
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 0.6
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 0.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 0.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 0.5
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 0.5
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 0.4
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 0.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 0.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 0.4
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 0.3
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 0.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 0.3
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 0.2
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 0.2
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 0.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 0.2
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 0.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 0.2
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 0.2
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 0.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 0.1
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 0.1
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 0.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 0.1
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

0.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 0.9
FF:10204-103F6 68 years, female 0.9

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