We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
JPT1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • JPT1
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:137.4 nTPM
HPA:137.4 nTPM
GTEx:90.4 nTPM
FANTOM5:248.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA059729
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.4
overview
Male, age 65
Small intestine sample 232
nTPM: 148
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 135.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 110.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 155.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 90.4
Samples: 187

Max nTPM: 254.2
Min nTPM: 7.7
Std nTPM: 61.9
Median nTPM: 79.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 254.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 251.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 246.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 231.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 230.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 228.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 223.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 218.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 207.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 206.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 205.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 198.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 194.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 191.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 184.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 182.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 181.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 178.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 178.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 175.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 173.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 171.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 170.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 168.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 167.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 167.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 166.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 163.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 160.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 159.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 157.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 156.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 155.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 154.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 154.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 153.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 151.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 148.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 143.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 143.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 143.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 139.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 138.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 138.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 137.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 136.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 135.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 135.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 134.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 133.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 133.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 133.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 131.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 131.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 128.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 128.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 128.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 124.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 119.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 118.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 116.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 116.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 115.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 114.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 111.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 110.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 107.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 102.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 102.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 102.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 101.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 101.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 100.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 99.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 99.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 98.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 98.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 97.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 96.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 96.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 94.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 90.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 90.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 88.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 88.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 85.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 85.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 85.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 84.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 84.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 84.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 80.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 80.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 79.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 76.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 75.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 75.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 74.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 74.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 73.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 73.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 73.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 72.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 72.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 70.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 67.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 66.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 65.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 63.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 62.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 62.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 62.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 60.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 58.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 58.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 57.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 56.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 56.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 55.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 54.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 52.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 51.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 50.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 49.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 49.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 47.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 47.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 46.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 45.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 44.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 44.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 44.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 41.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 41.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 41.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 41.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 39.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 38.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 36.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 35.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 35.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 34.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 33.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 33.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 32.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 31.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 31.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 30.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 30.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 30.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 28.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 28.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 27.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 27.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 26.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 26.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 25.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 23.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 22.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 22.3
GTEX-1192X-2526-SM-59868 50-59 years, male 20.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 20.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 19.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 19.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 19.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 18.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 18.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 17.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 17.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 17.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 17.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 16.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 16.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 16.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 16.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 15.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 15.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 15.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 14.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 12.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 11.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 11.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 11.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 10.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 9.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 8.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 7.7
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

248.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 248.4
FF:10024-101D6 15,40,85 years, mixed 248.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org