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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:298.1 nTPM
HPA Brain:191.4 nTPM
GTEx:298.1 nTPM
FANTOM5:211.5 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

191.4
Sample id Sample description nTPM
Amygdala
nTPM: 191.4
2814 Male, age 76, right hemisphere 211.0
2514 Male, age 75, right hemisphere 210.6
2695 Female, age 67, right hemisphere 204.6
1987 Female, age 91, left hemisphere 169.4
2517 Female, age 94, left hemisphere 161.3
Basal amygdala
nTPM: 161.4
2609 Male, age 75, right hemisphere 172.0
2110 Male, age 80, left hemisphere 165.5
2827 Female, age 67, right hemisphere 164.7
1955 Male, age 76, both hemispheres 157.8
2243 Female, age 91, right hemisphere 155.6
2685 Female, age 94, left hemisphere 153.1
Central amygdala
nTPM: 165.5
2826 Female, age 94, left hemisphere 174.1
1905 Male, age 76, both hemispheres 165.7
2515 Male, age 75, right hemisphere 165.3
2701 Female, age 91, right hemisphere 163.7
2239 Male, age 80, left hemisphere 158.5
Corticomedial amygdala
nTPM: 156.5
2428 Male, age 75, right hemisphere 171.7
2829 Male, age 80, left hemisphere 168.3
2240 Male, age 76, both hemispheres 161.9
2242 Female, age 91, right hemisphere 149.8
2429 Female, age 94, left hemisphere 148.3
2535 Female, age 67, right hemisphere 138.7
Lateral amygdala
nTPM: 167.3
2830 Female, age 67, right hemisphere 197.7
2516 Male, age 75, right hemisphere 189.8
1883 Male, age 76, both hemispheres 179.9
2256 Male, age 80, left hemisphere 152.9
2534 Female, age 94, left hemisphere 146.5
2255 Female, age 91, right hemisphere 137.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

298.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 298.1
Samples: 152

Max nTPM: 548.7
Min nTPM: 182.0
Std nTPM: 57.7
Median nTPM: 289.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 548.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 505.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 481.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 462.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 454.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 447.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 434.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 433.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 402.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 391.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 390.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 375.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 371.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 365.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 364.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 363.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 355.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 355.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 352.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 350.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 350.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 350.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 349.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 341.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 336.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 335.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 334.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 332.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 332.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 332.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 331.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 330.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 330.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 328.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 325.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 324.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 323.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 323.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 319.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 319.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 317.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 316.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 315.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 313.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 307.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 307.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 307.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 307.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 307.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 307.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 306.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 305.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 304.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 304.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 304.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 303.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 303.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 302.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 301.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 301.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 301.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 300.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 300.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 298.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 297.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 297.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 297.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 297.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 293.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 292.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 292.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 291.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 291.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 290.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 290.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 289.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 289.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 288.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 287.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 287.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 286.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 285.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 285.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 284.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 284.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 284.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 284.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 283.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 281.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 281.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 281.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 281.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 279.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 277.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 276.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 276.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 275.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 274.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 273.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 273.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 273.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 271.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 271.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 270.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 269.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 269.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 268.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 267.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 266.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 264.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 264.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 264.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 263.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 260.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 258.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 257.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 256.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 254.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 253.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 252.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 252.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 252.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 251.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 251.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 251.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 250.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 249.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 249.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 247.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 247.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 244.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 244.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 243.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 242.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 241.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 239.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 238.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 237.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 235.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 233.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 232.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 232.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 230.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 230.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 228.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 223.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 218.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 216.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 214.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 210.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 209.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 182.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

211.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 211.5
FF:10151-102I7 76 years, female 211.5

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