MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.7 nTPM
HPA Brain:17.6 nTPM
GTEx:17.7 nTPM
FANTOM5:16.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 17.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.8
2828 Female, age 72, unknown 12.7
1827 Male, age 72, unknown 9.8
2586 Male, age 75, left hemisphere 9.7
1870 Female, age 42, unknown 7.3
2666 Male, age 74, left hemisphere 7.3
1830 Male, age 51, unknown 7.1
1833 Male, age 53, unknown 6.7
2411 Female, age 72, unknown 6.3
2019 Male, age 18, unknown 5.5
2219 Male, age 76, both hemispheres 5.4
Dorsal raphe nucleus
nTPM: 13.7
2298 Female, age 72, unknown 20.1
2016 Female, age 72, unknown 16.8
1828 Male, age 53, unknown 12.8
2047 Male, age 72, unknown 10.8
2750 Male, age 76, both hemispheres 8.2
Inferior colliculus
nTPM: 9.2
1848 Female, age 42, unknown 11.2
2849 Male, age 72, unknown 10.2
2097 Female, age 72, unknown 8.5
1890 Male, age 53, unknown 7.0
Median raphe nucleus
nTPM: 8.8
2220 Male, age 76, midline 8.8
Periaquaductal grey, anterior
nTPM: 12.5
1795 Male, age 51, unknown 13.8
1947 Male, age 18, unknown 12.8
2502 Female, age 75, unknown 10.9
Periaquaductal grey, dorsal
nTPM: 14.5
2850 Male, age 76, both hemispheres 20.8
1840 Male, age 53, unknown 15.3
1831 Male, age 72, unknown 12.3
2464 Female, age 72, unknown 9.5
Periaquaductal grey, lateral
nTPM: 17.6
2140 Male, age 76, both hemispheres 21.9
2053 Male, age 18, unknown 16.4
2272 Male, age 74, both hemispheres 14.4
Pretectal area
nTPM: 10.5
2273 Male, age 74, both hemispheres 19.2
2224 Female, age 72, unknown 13.3
1816 Male, age 51, unknown 11.4
2316 Male, age 76, right hemisphere 11.3
2825 Male, age 18, unknown 11.2
2667 Female, age 75, unknown 9.9
1815 Male, age 53, unknown 9.3
1944 Female, age 72, unknown 8.4
1817 Female, age 42, unknown 8.0
2407 Male, age 75, both hemispheres 7.6
2007 Male, age 72, unknown 6.1
Red nucleus
nTPM: 8.9
2725 Female, age 75, unknown 12.0
1954 Female, age 42, unknown 11.7
2769 Male, age 72, unknown 10.3
1904 Male, age 53, unknown 10.2
2227 Male, age 72, unknown 10.1
2503 Female, age 72, unknown 9.6
1821 Female, age 72, unknown 9.4
1865 Male, age 51, unknown 8.4
2823 Male, age 76, right hemisphere 6.7
2588 Male, age 74, left hemisphere 6.2
2785 Male, age 18, unknown 6.2
2584 Male, age 75, left hemisphere 6.1
Substantia nigra
nTPM: 8.6
2699 Male, age 18, unknown 11.5
2583 Male, age 75, right hemisphere 10.9
1916 Female, age 42, unknown 9.0
1851 Male, age 51, unknown 8.9
2665 Male, age 74, both hemispheres 8.8
1889 Female, age 72, unknown 8.1
1941 Male, age 53, unknown 7.8
2241 Male, age 72, unknown 7.1
2409 Female, age 72, unknown 7.1
2590 Female, age 75, unknown 6.8
Superior colliculus
nTPM: 11.2
1995 Male, age 72, unknown 14.8
2261 Male, age 18, unknown 14.2
1796 Male, age 53, unknown 12.4
2668 Female, age 75, unknown 11.6
2087 Female, age 72, unknown 10.9
2587 Male, age 74, left hemisphere 10.6
2664 Male, age 75, both hemispheres 10.3
1913 Female, age 42, unknown 10.2
1839 Male, age 51, unknown 8.7
1895 Male, age 76, right hemisphere 8.5
Ventral tegmental area
nTPM: 10.1
1915 Female, age 42, unknown 12.0
2021 Male, age 53, unknown 12.0
1942 Male, age 51, unknown 10.6
2410 Female, age 72, unknown 9.3
2218 Male, age 76, both hemispheres 8.3
2223 Female, age 72, unknown 8.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.7
Samples: 139

Max nTPM: 62.4
Min nTPM: 3.0
Std nTPM: 9.2
Median nTPM: 15.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 62.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 51.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 41.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 40.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 40.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 38.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 36.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 36.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 36.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 35.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 34.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.0
FF:10158-103A5 76 years, female 16.0

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