MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:75.7 nTPM
HPA Brain:282.2 nTPM
GTEx:75.7 nTPM
FANTOM5:292.2 Scaled Tags Per Million
Pig:32.9 nTPM
Mouse:52.9 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 282.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 220.1
1830 Male, age 51, unknown 303.3
2411 Female, age 72, unknown 302.9
2019 Male, age 18, unknown 280.4
1833 Male, age 53, unknown 262.0
1870 Female, age 42, unknown 238.4
2828 Female, age 72, unknown 203.2
1827 Male, age 72, unknown 155.5
2219 Male, age 76, both hemispheres 155.4
2666 Male, age 74, left hemisphere 153.5
2586 Male, age 75, left hemisphere 146.2
Dorsal raphe nucleus
nTPM: 167.6
2750 Male, age 76, both hemispheres 326.3
2016 Female, age 72, unknown 169.3
1828 Male, age 53, unknown 158.2
2047 Male, age 72, unknown 95.7
2298 Female, age 72, unknown 88.4
Inferior colliculus
nTPM: 137.7
1890 Male, age 53, unknown 162.2
2849 Male, age 72, unknown 139.4
1848 Female, age 42, unknown 135.0
2097 Female, age 72, unknown 114.0
Median raphe nucleus
nTPM: 140.8
2220 Male, age 76, midline 140.8
Periaquaductal grey, anterior
nTPM: 108.6
1947 Male, age 18, unknown 121.4
1795 Male, age 51, unknown 108.9
2502 Female, age 75, unknown 95.5
Periaquaductal grey, dorsal
nTPM: 104.8
2464 Female, age 72, unknown 172.0
1831 Male, age 72, unknown 118.5
2850 Male, age 76, both hemispheres 70.2
1840 Male, age 53, unknown 58.4
Periaquaductal grey, lateral
nTPM: 127.5
2272 Male, age 74, both hemispheres 154.7
2053 Male, age 18, unknown 143.1
2140 Male, age 76, both hemispheres 84.8
Pretectal area
nTPM: 140.0
2316 Male, age 76, right hemisphere 232.7
2407 Male, age 75, both hemispheres 183.2
1815 Male, age 53, unknown 182.1
2273 Male, age 74, both hemispheres 144.5
2825 Male, age 18, unknown 139.1
2007 Male, age 72, unknown 135.9
2667 Female, age 75, unknown 135.7
1817 Female, age 42, unknown 122.5
2224 Female, age 72, unknown 112.1
1944 Female, age 72, unknown 84.1
1816 Male, age 51, unknown 68.4
Red nucleus
nTPM: 282.2
2823 Male, age 76, right hemisphere 375.6
1865 Male, age 51, unknown 340.9
1904 Male, age 53, unknown 304.2
2769 Male, age 72, unknown 303.5
2227 Male, age 72, unknown 301.8
2785 Male, age 18, unknown 292.6
1821 Female, age 72, unknown 290.7
2503 Female, age 72, unknown 285.5
2588 Male, age 74, left hemisphere 272.0
1954 Female, age 42, unknown 232.7
2725 Female, age 75, unknown 198.0
2584 Male, age 75, left hemisphere 188.8
Substantia nigra
nTPM: 165.0
2409 Female, age 72, unknown 230.2
2583 Male, age 75, right hemisphere 220.8
2590 Female, age 75, unknown 219.8
1851 Male, age 51, unknown 180.9
1889 Female, age 72, unknown 168.4
2699 Male, age 18, unknown 151.9
1941 Male, age 53, unknown 143.7
2241 Male, age 72, unknown 128.9
1916 Female, age 42, unknown 104.5
2665 Male, age 74, both hemispheres 100.6
Superior colliculus
nTPM: 186.5
1913 Female, age 42, unknown 341.1
1995 Male, age 72, unknown 288.9
1895 Male, age 76, right hemisphere 222.3
2587 Male, age 74, left hemisphere 195.7
2668 Female, age 75, unknown 191.4
1839 Male, age 51, unknown 180.0
1796 Male, age 53, unknown 141.0
2087 Female, age 72, unknown 118.6
2261 Male, age 18, unknown 93.4
2664 Male, age 75, both hemispheres 92.2
Ventral tegmental area
nTPM: 194.6
2223 Female, age 72, unknown 272.4
2410 Female, age 72, unknown 247.8
2021 Male, age 53, unknown 175.9
1942 Male, age 51, unknown 171.2
2218 Male, age 76, both hemispheres 164.3
1915 Female, age 42, unknown 135.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 75.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.7
Samples: 139

Max nTPM: 272.1
Min nTPM: 8.1
Std nTPM: 51.8
Median nTPM: 60.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 272.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 245.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 242.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 237.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 227.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 211.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 205.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 198.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 197.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 179.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 171.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 292.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 292.2
FF:10158-103A5 76 years, female 292.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.1
Samples: 4

Max nTPM: 50.4
Min nTPM: 20.7
Sample A Female 24.5
Sample B Female 20.7
Sample C Male 24.9
Sample D Male 50.4
Midbrain
nTPM: 32.9
Samples: 4

Max nTPM: 67.3
Min nTPM: 18.2
Sample A Female 67.3
Sample B Female 27.4
Sample C Male 18.2
Sample D Male 18.8
Periaqueductal gray
nTPM: 19.0
Samples: 3

Max nTPM: 22.4
Min nTPM: 15.6
Sample B Female 22.4
Sample C Male 15.6
Sample D Male 19.0
Superior colliculi
nTPM: 27.3
Samples: 4

Max nTPM: 29.3
Min nTPM: 25.0
Sample A Female 25.9
Sample B Female 25.0
Sample C Male 29.3
Sample D Male 28.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 52.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.0
Samples: 4

Max nTPM: 56.3
Min nTPM: 50.6
Sample A Male 50.6
Sample B Male 50.7
Sample C Female 56.3
Sample D Female 54.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
68637838 Antisense, RP_050126_01_G01, Mouse strain C57BL/6J (56 days, male) 2.0

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