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POM121
HPA
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  • POM121
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

POM121
Synonyms DKFZP586G1822, DKFZP586P2220, KIAA0618, POM121A
Gene descriptioni

Full gene name according to HGNC.

POM121 transmembrane nucleoporin
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Metabolic proteins
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 7
Cytoband q11.23
Chromosome location (bp) 72879349 - 72951440
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000196313 (version 109)
Entrez gene 9883
HGNC HGNC:19702
UniProt Q96HA1 (UniProt - Evidence at protein level)
neXtProt NX_Q96HA1
GeneCards POM121
Antibodypedia POM121 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Essential component of the nuclear pore complex (NPC). The repeat-containing domain may be involved in anchoring components of the pore complex to the pore membrane. When overexpressed in cells induces the formation of cytoplasmic annulate lamellae (AL).... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

mRNA transport, Protein transport, Translocation, Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a transmembrane protein that localizes to the inner nuclear membrane and forms a core component of the nuclear pore complex, which mediates transport to and from the nucleus. The encoded protein may anchor this complex to the nuclear envelope. There are multiple related genes and pseudogenes for this gene on chromosomes 5, 7, 15, and 22. Alternatively spliced transcript variants encoding different isoforms have been observed. [provided by RefSeq, Jul 2013]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
POM121-201
ENSP00000378687
ENST00000395270
Q96HA1
[Direct mapping] Nuclear envelope pore membrane protein POM 121
Show all
Metabolic proteins
Transporters
   Transporter channels and pores
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005643 [nuclear pore]
GO:0005654 [nucleoplasm]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006405 [RNA export from nucleus]
GO:0006606 [protein import into nucleus]
GO:0006913 [nucleocytoplasmic transport]
GO:0008139 [nuclear localization sequence binding]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0017056 [structural constituent of nuclear pore]
GO:0031965 [nuclear membrane]
GO:0051028 [mRNA transport]
Show all
999 aa
100.9 kDa
No 0
POM121-202
ENSP00000405562
ENST00000434423
Q96HA1
[Direct mapping] Nuclear envelope pore membrane protein POM 121
Show all
Metabolic proteins
Transporters
   Transporter channels and pores
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005643 [nuclear pore]
GO:0005654 [nucleoplasm]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006405 [RNA export from nucleus]
GO:0006606 [protein import into nucleus]
GO:0006913 [nucleocytoplasmic transport]
GO:0008139 [nuclear localization sequence binding]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0017056 [structural constituent of nuclear pore]
GO:0031965 [nuclear membrane]
GO:0051028 [mRNA transport]
Show all
1249 aa
127.7 kDa
No 0
POM121-203
ENSP00000486504
ENST00000627934
Q96HA1
[Direct mapping] Nuclear envelope pore membrane protein POM 121
Show all
Metabolic proteins
Transporters
   Transporter channels and pores
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005643 [nuclear pore]
GO:0005654 [nucleoplasm]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006405 [RNA export from nucleus]
GO:0006606 [protein import into nucleus]
GO:0006913 [nucleocytoplasmic transport]
GO:0008139 [nuclear localization sequence binding]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0017056 [structural constituent of nuclear pore]
GO:0031965 [nuclear membrane]
GO:0051028 [mRNA transport]
Show all
984 aa
99 kDa
No 0

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