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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:167.9 nTPM
HPA Brain:160.7 nTPM
GTEx:167.9 nTPM
FANTOM5:219.9 Scaled Tags Per Million
Pig:105.5 nTPM
Mouse:151.5 nTPM
Allen mouse:10.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.7
Sample id Sample description nTPM
Amygdala
nTPM: 122.1
2814 Male, age 76, right hemisphere 150.6
1987 Female, age 91, left hemisphere 126.7
2517 Female, age 94, left hemisphere 117.9
2514 Male, age 75, right hemisphere 117.3
2695 Female, age 67, right hemisphere 98.2
Basal amygdala
nTPM: 155.2
2243 Female, age 91, right hemisphere 181.8
2827 Female, age 67, right hemisphere 169.9
2685 Female, age 94, left hemisphere 163.0
1955 Male, age 76, both hemispheres 152.0
2110 Male, age 80, left hemisphere 133.2
2609 Male, age 75, right hemisphere 131.4
Central amygdala
nTPM: 147.8
2701 Female, age 91, right hemisphere 171.7
1905 Male, age 76, both hemispheres 157.6
2826 Female, age 94, left hemisphere 152.9
2239 Male, age 80, left hemisphere 141.7
2515 Male, age 75, right hemisphere 114.8
Corticomedial amygdala
nTPM: 160.7
2535 Female, age 67, right hemisphere 190.6
2242 Female, age 91, right hemisphere 168.1
2429 Female, age 94, left hemisphere 166.2
2240 Male, age 76, both hemispheres 152.8
2829 Male, age 80, left hemisphere 148.3
2428 Male, age 75, right hemisphere 138.2
Lateral amygdala
nTPM: 139.9
2255 Female, age 91, right hemisphere 166.6
2534 Female, age 94, left hemisphere 163.7
2256 Male, age 80, left hemisphere 151.2
1883 Male, age 76, both hemispheres 134.6
2830 Female, age 67, right hemisphere 123.5
2516 Male, age 75, right hemisphere 99.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 167.9
Samples: 152

Max nTPM: 375.4
Min nTPM: 38.7
Std nTPM: 50.8
Median nTPM: 163.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 375.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 294.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 293.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 288.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 276.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 263.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 258.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 249.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 248.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 244.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 243.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 241.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 235.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 233.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 233.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 231.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 227.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 226.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 218.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 218.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 216.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 215.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 214.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 213.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 212.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 212.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 210.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 209.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 208.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 207.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 205.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 204.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 203.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 203.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 201.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 201.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 200.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 199.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 198.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 197.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 197.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 196.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 196.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 193.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 193.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 192.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 189.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 189.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 187.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 187.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 186.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 183.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 183.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 182.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 182.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 181.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 181.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 181.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 181.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 177.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 177.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 177.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 176.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 176.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 174.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 174.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 174.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 174.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 174.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 173.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 168.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 165.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 165.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 165.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 164.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 163.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 163.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 162.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 162.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 161.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 161.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 160.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 160.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 160.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 158.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 158.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 157.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 156.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 156.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 155.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 154.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 154.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 153.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 152.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 152.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 152.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 151.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 150.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 150.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 148.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 148.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 147.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 147.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 143.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 143.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 143.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 142.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 142.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 138.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 138.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 137.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 137.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 136.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 136.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 136.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 134.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 134.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 133.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 133.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 127.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 125.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 124.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 122.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 122.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 120.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 119.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 119.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 119.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 119.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 117.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 116.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 116.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 113.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 113.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 112.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 110.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 110.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 109.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 107.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 101.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 101.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 98.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 97.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 95.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 93.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 90.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 77.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 74.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 71.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 61.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 41.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 38.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

219.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 219.9
FF:10151-102I7 76 years, female 219.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.5
Pig sample Sample description nTPM
Amygdala
nTPM: 105.5
Samples: 4

Max nTPM: 126.7
Min nTPM: 93.6
Sample A Female 126.7
Sample B Female 93.6
Sample C Male 106.5
Sample D Male 95.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 151.5
Samples: 4

Max nTPM: 174.4
Min nTPM: 134.7
Sample A Male 134.7
Sample B Male 142.2
Sample C Female 174.4
Sample D Female 154.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.2
69838381 Antisense, RP_050301_02_G07, Mouse strain C57BL/6J (56 days, male) 10.2

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