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TRAPPC2
HPA
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  • SUMMARY

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  • TRAPPC2
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

TRAPPC2
Synonyms hYP38334, MIP-2A, SEDL, SEDT, TRS20, ZNF547L
Gene descriptioni

Full gene name according to HGNC.

Trafficking protein particle complex subunit 2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome X
Cytoband p22.2
Chromosome location (bp) 13712244 - 13734635
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

7
Ensembl ENSG00000196459 (version 109)
Entrez gene 6399
HGNC HGNC:23068
UniProt P0DI81 (UniProt - Evidence at protein level)
neXtProt NX_P0DI81
GeneCards TRAPPC2
Antibodypedia TRAPPC2 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Prevents transcriptional repression and induction of cell death by ENO1 (By similarity). May play a role in vesicular transport from endoplasmic reticulum to Golgi.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

ER-Golgi transport, Transcription, Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

The protein encoded by this gene is thought to be part of a large multi-subunit complex involved in the targeting and fusion of endoplasmic reticulum-to-Golgi transport vesicles with their acceptor compartment. In addition, the encoded protein can bind c-myc promoter-binding protein 1 and block its transcriptional repression capability. Mutations in this gene are a cause of spondyloepiphyseal dysplasia tarda (SEDT). A processed pseudogene of this gene is located on chromosome 19, and other pseudogenes are found on chromosomes 8 and Y. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Mar 2010]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
TRAPPC2-201
ENSP00000352708
ENST00000359680
P0DI81
[Direct mapping] Trafficking protein particle complex subunit 2
Show all
Q6IBE5
[Target identity:100%; Query identity:100%] Trafficking protein particle complex 2, isoform CRA_a; Trafficking protein particle complex 2, isoform CRA_b; ZNF547 protein; Zinc finger protein 547, isoform CRA_a; cDNA, FLJ94336, Homo sapiens spondyloepiphyseal dysplasia, late (SEDL), mRNA
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0001501 [skeletal system development]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005783 [endoplasmic reticulum]
GO:0005793 [endoplasmic reticulum-Golgi intermediate compartment]
GO:0005829 [cytosol]
GO:0006888 [endoplasmic reticulum to Golgi vesicle-mediated transport]
GO:0006901 [vesicle coating]
GO:0016192 [vesicle-mediated transport]
GO:0030008 [TRAPP complex]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0044325 [transmembrane transporter binding]
GO:0048208 [COPII vesicle coating]
GO:0048471 [perinuclear region of cytoplasm]
GO:0099022 [vesicle tethering]
GO:1990071 [TRAPPII protein complex]
GO:1990072 [TRAPPIII protein complex]
Show all
140 aa
16.4 kDa
No 0
TRAPPC2-203
ENSP00000369953
ENST00000380579
P0DI81
[Direct mapping] Trafficking protein particle complex subunit 2
Show all
Q6IBE5
[Target identity:100%; Query identity:100%] Trafficking protein particle complex 2, isoform CRA_a; Trafficking protein particle complex 2, isoform CRA_b; ZNF547 protein; Zinc finger protein 547, isoform CRA_a; cDNA, FLJ94336, Homo sapiens spondyloepiphyseal dysplasia, late (SEDL), mRNA
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0001501 [skeletal system development]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005783 [endoplasmic reticulum]
GO:0005793 [endoplasmic reticulum-Golgi intermediate compartment]
GO:0005829 [cytosol]
GO:0006888 [endoplasmic reticulum to Golgi vesicle-mediated transport]
GO:0006901 [vesicle coating]
GO:0016192 [vesicle-mediated transport]
GO:0030008 [TRAPP complex]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0044325 [transmembrane transporter binding]
GO:0048208 [COPII vesicle coating]
GO:0048471 [perinuclear region of cytoplasm]
GO:0099022 [vesicle tethering]
GO:1990071 [TRAPPII protein complex]
GO:1990072 [TRAPPIII protein complex]
Show all
140 aa
16.4 kDa
No 0
TRAPPC2-204
ENSP00000392495
ENST00000458511
P0DI81
[Direct mapping] Trafficking protein particle complex subunit 2
Show all
Q6IBE5
[Target identity:100%; Query identity:100%] Trafficking protein particle complex 2, isoform CRA_a; Trafficking protein particle complex 2, isoform CRA_b; ZNF547 protein; Zinc finger protein 547, isoform CRA_a; cDNA, FLJ94336, Homo sapiens spondyloepiphyseal dysplasia, late (SEDL), mRNA
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0001501 [skeletal system development]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005783 [endoplasmic reticulum]
GO:0005793 [endoplasmic reticulum-Golgi intermediate compartment]
GO:0005829 [cytosol]
GO:0006888 [endoplasmic reticulum to Golgi vesicle-mediated transport]
GO:0006901 [vesicle coating]
GO:0016192 [vesicle-mediated transport]
GO:0030008 [TRAPP complex]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0044325 [transmembrane transporter binding]
GO:0048208 [COPII vesicle coating]
GO:0048471 [perinuclear region of cytoplasm]
GO:0099022 [vesicle tethering]
GO:1990071 [TRAPPII protein complex]
GO:1990072 [TRAPPIII protein complex]
Show all
140 aa
16.4 kDa
No 0
TRAPPC2-206
ENSP00000428900
ENST00000518847
P0DI81
[Direct mapping] Trafficking protein particle complex subunit 2
Show all
E5RFG0
[Direct mapping] Trafficking protein particle complex subunit 2
Q6IBE5
[Target identity:100%; Query identity:100%] Trafficking protein particle complex 2, isoform CRA_a; Trafficking protein particle complex 2, isoform CRA_b; ZNF547 protein; Zinc finger protein 547, isoform CRA_a; cDNA, FLJ94336, Homo sapiens spondyloepiphyseal dysplasia, late (SEDL), mRNA
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0001501 [skeletal system development]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005783 [endoplasmic reticulum]
GO:0005793 [endoplasmic reticulum-Golgi intermediate compartment]
GO:0005829 [cytosol]
GO:0006888 [endoplasmic reticulum to Golgi vesicle-mediated transport]
GO:0006901 [vesicle coating]
GO:0016192 [vesicle-mediated transport]
GO:0030008 [TRAPP complex]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0044325 [transmembrane transporter binding]
GO:0048208 [COPII vesicle coating]
GO:0048471 [perinuclear region of cytoplasm]
GO:0099022 [vesicle tethering]
GO:1990071 [TRAPPII protein complex]
GO:1990072 [TRAPPIII protein complex]
Show all
140 aa
16.4 kDa
No 0
TRAPPC2-208
ENSP00000430725
ENST00000519885
F5H785
[Direct mapping] Trafficking protein particle complex subunit 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Show all
GO:0005654 [nucleoplasm]
GO:0005783 [endoplasmic reticulum]
GO:0006888 [endoplasmic reticulum to Golgi vesicle-mediated transport]
GO:0016192 [vesicle-mediated transport]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0048208 [COPII vesicle coating]
GO:0048471 [perinuclear region of cytoplasm]
GO:0099022 [vesicle tethering]
GO:1990071 [TRAPPII protein complex]
GO:1990072 [TRAPPIII protein complex]
Show all
113 aa
13.4 kDa
No 0
TRAPPC2-209
ENSP00000508155
ENST00000683569
P0DI81
[Direct mapping] Trafficking protein particle complex subunit 2
Show all
Q6IBE5
[Target identity:100%; Query identity:100%] Trafficking protein particle complex 2, isoform CRA_a; Trafficking protein particle complex 2, isoform CRA_b; ZNF547 protein; Zinc finger protein 547, isoform CRA_a; cDNA, FLJ94336, Homo sapiens spondyloepiphyseal dysplasia, late (SEDL), mRNA
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0001501 [skeletal system development]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005783 [endoplasmic reticulum]
GO:0005793 [endoplasmic reticulum-Golgi intermediate compartment]
GO:0005829 [cytosol]
GO:0006888 [endoplasmic reticulum to Golgi vesicle-mediated transport]
GO:0006901 [vesicle coating]
GO:0016192 [vesicle-mediated transport]
GO:0030008 [TRAPP complex]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0044325 [transmembrane transporter binding]
GO:0048208 [COPII vesicle coating]
GO:0048471 [perinuclear region of cytoplasm]
GO:0099022 [vesicle tethering]
GO:1990071 [TRAPPII protein complex]
GO:1990072 [TRAPPIII protein complex]
Show all
140 aa
16.4 kDa
No 0
TRAPPC2-210
ENSP00000507474
ENST00000683983
P0DI81
[Direct mapping] Trafficking protein particle complex subunit 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the musculoskeletal system
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0001501 [skeletal system development]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005783 [endoplasmic reticulum]
GO:0005793 [endoplasmic reticulum-Golgi intermediate compartment]
GO:0005829 [cytosol]
GO:0006888 [endoplasmic reticulum to Golgi vesicle-mediated transport]
GO:0006901 [vesicle coating]
GO:0016192 [vesicle-mediated transport]
GO:0030008 [TRAPP complex]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0044325 [transmembrane transporter binding]
GO:0048208 [COPII vesicle coating]
GO:0048471 [perinuclear region of cytoplasm]
GO:0099022 [vesicle tethering]
GO:1990071 [TRAPPII protein complex]
GO:1990072 [TRAPPIII protein complex]
Show all
174 aa
20.4 kDa
No 0

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