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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:439.1 nTPM
GTEx:439.1 nTPM
FANTOM5:190.1 Scaled Tags Per Million
Pig:83.5 nTPM
Mouse:801.7 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

439.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 439.1
Samples: 105

Max nTPM: 695.0
Min nTPM: 295.5
Std nTPM: 77.7
Median nTPM:
491_1 89 years, female 695.0
35_1 74 years, female 641.8
162_1 79 years, female 585.6
137_1 83 years, male 579.9
466_1 57 years, female 568.8
495_1 57 years, female 564.4
308_1 70 years, female 547.0
145_1 84 years, male 543.0
315_1 62 years, female 538.3
379_1 60 years, male 536.5
384_1 83 years, male 534.5
126_1 63 years, male 534.2
142_1 61 years, female 533.4
321_1 62 years, female 532.9
237_1 82 years, male 526.9
139_1 64 years, female 526.0
375_1 74 years, female 525.1
307_1 66 years, female 521.9
2_1 77 years, female 514.9
229_1 69 years, female 512.8
447_1 81 years, male 511.4
117_1 61 years, male 509.4
17_1 71 years, male 503.8
41_1 94 years, female 501.0
217_1 76 years, male 499.8
396_1 62 years, male 499.8
452_1 88 years, female 497.7
311_1 78 years, male 496.5
376_1 75 years, female 489.1
288_1 66 years, female 484.0
518_1 75 years, female 475.3
501_1 88 years, male 470.9
109_1 81 years, female 470.3
389_1 86 years, female 470.1
4_1 88 years, female 470.0
153_1 70 years, female 466.3
89_1 63 years, male 464.8
119_1 70 years, female 464.8
120_1 70 years, female 461.8
322_1 76 years, male 461.2
490_1 67 years, female 458.5
348_1 84 years, male 457.6
6_1 73 years, female 457.5
355_1 70 years, female 455.7
266_1 85 years, male 455.5
246_1 77 years, male 454.1
316_1 62 years, male 452.7
415_1 77 years, female 452.5
377_1 82 years, female 452.3
394_1 75 years, female 446.3
414_1 84 years, female 445.8
499_1 55 years, female 441.5
413_1 59 years, female 438.2
218_1 71 years, female 436.7
173_1 67 years, male 429.8
42_1 85 years, male 426.9
335_1 73 years, female 424.0
81_1 67 years, male 421.8
189_1 76 years, male 421.1
468_1 89 years, male 420.0
405_1 91 years, male 417.6
386_1 76 years, male 417.3
320_1 89 years, female 413.3
317_1 60 years, male 410.4
43_1 64 years, female 409.1
314_1 67 years, male 405.1
526_1 61 years, male 404.2
115_1 83 years, male 404.1
291_1 76 years, male 401.6
149_1 88 years, male 400.8
9_1 66 years, female 397.5
347_1 72 years, male 396.7
404_1 82 years, female 393.0
351_1 91 years, male 392.4
319_1 81 years, male 387.3
265_1 87 years, male 387.1
18_1 88 years, male 385.9
503_1 68 years, male 385.0
99_1 64 years, male 384.8
32_1 67 years, male 384.4
295_1 61 years, female 381.9
318_1 68 years, male 378.6
254_1 77 years, female 377.9
292_1 71 years, male 377.9
264_1 73 years, female 371.7
324_1 76 years, male 371.2
243_1 75 years, male 363.1
177_1 74 years, male 359.1
251_1 78 years, male 351.9
313_1 79 years, female 349.0
480_1 63 years, male 348.1
517_1 88 years, male 347.7
506_1 65 years, male 345.5
286_1 68 years, female 342.7
353_1 82 years, female 338.2
354_1 81 years, female 337.4
349_1 83 years, male 329.8
406_1 79 years, male 323.6
352_1 62 years, male 319.8
163_1 78 years, male 315.1
350_1 84 years, female 312.8
172_1 72 years, female 311.9
293_1 68 years, female 303.9
356_1 87 years, female 296.4
425_1 59 years, female 295.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

190.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 190.1
FF:10030-101E3 24-65 years, mixed 190.1

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

83.5
Pig sample Sample description nTPM
Retina
nTPM: 83.5
Samples: 4

Max nTPM: 91.9
Min nTPM: 79.7
Sample A Female 79.8
Sample B Female 82.6
Sample C Male 91.9
Sample D Male 79.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

801.7
Mouse sample Sample description nTPM
Retina
nTPM: 801.7
Samples: 4

Max nTPM: 915.3
Min nTPM: 702.4
Sample A Male 833.0
Sample B Male 702.4
Sample C Female 915.3
Sample D Female 756.1

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