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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:865.1 nTPM
HPA:583.1 nTPM
GTEx:865.1 nTPM
FANTOM5:331.4 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

583.1
overview
Male, age 65
Small intestine sample 232
nTPM: 720.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 553.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 484
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 573.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

865.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 865.1
Samples: 187

Max nTPM: 1984.6
Min nTPM: 476.0
Std nTPM: 248.2
Median nTPM: 821.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1984.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1783.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1688.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1603.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1523.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1457.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1447.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1433.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1406.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1371.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1364.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1361.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1279.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1262.7
GTEX-1192X-2526-SM-59868 50-59 years, male 1228.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1199.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1196.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1192.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1183.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 1163.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1141.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1130.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1119.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1117.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1115.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1112.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1112.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1086.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1077.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1069.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1058.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1042.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1039.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1038.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1032.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1024.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1021.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1014.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1012.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1003.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 997.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 994.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 990.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 987.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 984.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 983.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 979.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 977.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 975.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 969.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 968.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 963.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 954.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 948.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 935.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 931.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 926.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 924.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 923.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 923.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 917.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 905.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 905.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 897.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 893.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 893.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 892.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 884.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 879.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 878.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 877.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 875.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 870.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 866.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 864.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 861.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 857.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 852.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 850.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 847.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 846.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 845.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 843.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 842.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 840.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 839.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 839.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 839.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 838.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 835.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 831.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 824.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 821.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 821.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 819.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 815.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 806.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 805.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 804.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 801.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 795.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 795.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 793.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 790.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 788.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 774.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 774.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 773.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 772.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 772.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 772.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 771.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 771.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 770.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 766.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 755.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 753.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 752.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 748.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 748.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 746.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 746.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 744.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 743.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 737.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 731.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 729.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 729.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 723.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 723.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 719.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 718.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 714.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 714.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 711.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 708.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 705.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 704.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 700.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 698.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 693.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 690.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 690.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 686.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 686.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 683.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 683.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 676.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 675.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 672.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 667.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 665.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 664.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 663.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 659.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 653.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 650.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 643.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 639.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 639.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 635.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 632.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 629.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 617.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 613.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 613.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 613.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 611.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 610.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 606.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 602.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 600.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 598.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 593.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 578.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 565.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 565.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 561.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 558.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 555.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 541.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 539.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 539.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 528.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 524.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 512.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 476.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

331.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 331.4
FF:10024-101D6 15,40,85 years, mixed 331.4

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