We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PLXNB2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • PLXNB2
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

PLXNB2
Synonyms KIAA0315, MM1, PLEXB2
Gene descriptioni

Full gene name according to HGNC.

Plexin B2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 22
Cytoband q13.33
Chromosome location (bp) 50274979 - 50307646
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

7
Ensembl ENSG00000196576 (version 109)
Entrez gene 23654
HGNC HGNC:9104
UniProt O15031 (UniProt - Evidence at protein level)
neXtProt NX_O15031
GeneCards PLXNB2
Antibodypedia PLXNB2 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Cell surface receptor for SEMA4C, SEMA4D and SEMA4G that plays an important role in cell-cell signaling (By similarity). Plays a role in glutamatergic synapse development and is required for SEMA4A-mediated excitatory synapse development (By similarity). Binding to class 4 semaphorins promotes downstream activation of RHOA and phosphorylation of ERBB2 at 'Tyr-1248' (By similarity). Required for normal differentiation and migration of neuronal cells during brain corticogenesis and for normal embryonic brain development (By similarity). Regulates the migration of cerebellar granule cells in the developing brain (By similarity). Plays a role in RHOA activation and subsequent changes of the actin cytoskeleton 1. Plays a role in axon guidance, invasive growth and cell migration 2. May modulate the activity of RAC1 and CDC42 (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Developmental protein, Receptor
Gene summary (Entrez)i

Useful information about the gene from Entrez

Members of the B class of plexins, such as PLXNB2 are transmembrane receptors that participate in axon guidance and cell migration in response to semaphorins (Perrot et al. (2002)).[supplied by OMIM, Mar 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
PLXNB2-201
ENSP00000352288
ENST00000359337
O15031
[Direct mapping] Plexin-B2
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001843 [neural tube closure]
GO:0001932 [regulation of protein phosphorylation]
GO:0002116 [semaphorin receptor complex]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0007156 [homophilic cell adhesion via plasma membrane adhesion molecules]
GO:0007162 [negative regulation of cell adhesion]
GO:0007165 [signal transduction]
GO:0007405 [neuroblast proliferation]
GO:0007420 [brain development]
GO:0008360 [regulation of cell shape]
GO:0009986 [cell surface]
GO:0010976 [positive regulation of neuron projection development]
GO:0016020 [membrane]
GO:0017154 [semaphorin receptor activity]
GO:0030334 [regulation of cell migration]
GO:0043087 [regulation of GTPase activity]
GO:0045727 [positive regulation of translation]
GO:0050772 [positive regulation of axonogenesis]
GO:0070062 [extracellular exosome]
GO:0071526 [semaphorin-plexin signaling pathway]
GO:1902287 [semaphorin-plexin signaling pathway involved in axon guidance]
GO:1904861 [excitatory synapse assembly]
GO:2001222 [regulation of neuron migration]
Show all
1838 aa
205.1 kDa
Yes 1
PLXNB2-202
ENSP00000400679
ENST00000411680
A6QRG9
[Direct mapping] Plexin-B2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0007165 [signal transduction]
GO:0017154 [semaphorin receptor activity]
GO:0071526 [semaphorin-plexin signaling pathway]
Show all
234 aa
26.2 kDa
No 0
PLXNB2-203
ENSP00000387470
ENST00000425954
A6QRH1
[Direct mapping] Plexin-B2
Show all
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0017154 [semaphorin receptor activity]
GO:0071526 [semaphorin-plexin signaling pathway]
Show all
161 aa
17.3 kDa
Yes 0
PLXNB2-204
ENSP00000406048
ENST00000427829
H0Y6J7
[Direct mapping] Plexin-B2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0017154 [semaphorin receptor activity]
GO:0071526 [semaphorin-plexin signaling pathway]
Show all
189 aa
20.8 kDa
No 0
PLXNB2-205
ENSP00000392620
ENST00000432455
E2PU09
[Direct mapping] Plexin-B2
Show all
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0017154 [semaphorin receptor activity]
GO:0071526 [semaphorin-plexin signaling pathway]
Show all
477 aa
51.8 kDa
Yes 0
PLXNB2-206
ENSP00000415757
ENST00000434732
H0Y7X5
[Direct mapping] Plexin-B2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
84 aa
9.1 kDa
No 0
PLXNB2-207
ENSP00000409171
ENST00000449103
O15031
[Direct mapping] Plexin-B2
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001843 [neural tube closure]
GO:0001932 [regulation of protein phosphorylation]
GO:0002116 [semaphorin receptor complex]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0007156 [homophilic cell adhesion via plasma membrane adhesion molecules]
GO:0007162 [negative regulation of cell adhesion]
GO:0007165 [signal transduction]
GO:0007405 [neuroblast proliferation]
GO:0007420 [brain development]
GO:0008360 [regulation of cell shape]
GO:0009986 [cell surface]
GO:0010976 [positive regulation of neuron projection development]
GO:0016020 [membrane]
GO:0017154 [semaphorin receptor activity]
GO:0030334 [regulation of cell migration]
GO:0043087 [regulation of GTPase activity]
GO:0045727 [positive regulation of translation]
GO:0050772 [positive regulation of axonogenesis]
GO:0070062 [extracellular exosome]
GO:0071526 [semaphorin-plexin signaling pathway]
GO:1902287 [semaphorin-plexin signaling pathway involved in axon guidance]
GO:1904861 [excitatory synapse assembly]
GO:2001222 [regulation of neuron migration]
Show all
1838 aa
205.1 kDa
Yes 1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org