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  • HLA-DQA1
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:39.6 nTPM
HPA Brain:7.5 nTPM
GTEx:39.6 nTPM
FANTOM5:51.0 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 4.9
1981 Female, age 72, midline 7.5
2816 Male, age 47, midline 5.8
2048 Male, age 55, midline 4.5
2565 Male, age 75, midline 4.1
2194 Female, age 79, both hemispheres 2.4
Cervical spinal cord, dorsal horn
nTPM: 5.0
2173 Female, age 72, unknown 7.2
2297 Male, age 75, both hemispheres 6.0
2069 Male, age 47, both hemispheres 5.6
1877 Male, age 55, unknown 5.1
2296 Male, age 66, both hemispheres 3.6
2721 Male, age 90, both hemispheres 2.6
Cervical spinal cord, ventral horn
nTPM: 7.5
2098 Female, age 72, unknown 22.5
2809 Male, age 90, both hemispheres 6.9
2295 Male, age 66, both hemispheres 6.0
2480 Male, age 75, both hemispheres 4.0
2068 Male, age 55, unknown 2.9
2820 Female, age 79, both hemispheres 2.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 39.6
Samples: 159

Max nTPM: 260.4
Min nTPM: 3.1
Std nTPM: 33.0
Median nTPM: 32.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 260.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 167.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 126.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 122.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 116.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 113.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 103.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 102.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 90.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 85.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 84.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 83.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 82.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 81.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 81.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 80.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 79.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 77.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 70.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 70.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 69.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 68.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 68.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 67.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 66.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 63.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 62.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 60.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 59.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 56.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 56.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 55.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 54.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 53.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 53.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 53.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 52.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 51.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 51.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 49.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 49.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 49.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 48.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 48.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 48.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 48.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 47.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 47.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 47.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 47.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 47.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 46.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 46.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 44.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 44.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 43.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 43.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 42.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 42.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 42.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 42.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 41.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 41.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 40.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 40.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 40.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 40.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 40.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 38.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 38.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 38.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 38.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 35.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 35.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 34.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 34.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 34.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 33.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 33.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 32.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 32.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 32.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 30.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 30.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 30.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 29.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 28.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 27.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 27.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 27.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 27.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 26.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 26.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 26.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 26.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 25.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 25.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 24.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 24.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 24.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 23.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 23.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 23.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 23.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 22.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 22.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 21.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 20.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 19.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 19.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 19.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 19.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 19.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 18.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 18.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 18.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 17.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 17.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 17.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 16.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 16.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 15.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 15.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 15.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 14.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 14.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 14.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 14.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 14.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 13.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 13.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 13.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 13.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 13.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 12.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 12.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 12.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 12.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 11.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 10.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 10.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 9.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 9.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 9.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 8.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 8.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 7.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 7.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 7.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 7.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 7.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 6.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 5.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 5.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 3.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 3.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 3.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 3.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 3.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

51.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 51.0
FF:10159-103A6 76 years, female 87.4
FF:10181-103D1 60 years, female 14.6

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