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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:276.7 nTPM
GTEx:276.7 nTPM
FANTOM5:61.0 Scaled Tags Per Million
Pig:143.1 nTPM
Mouse:53.3 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

276.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 276.7
Samples: 105

Max nTPM: 607.9
Min nTPM: 104.7
Std nTPM: 90.8
Median nTPM:
415_1 77 years, female 607.9
413_1 59 years, female 540.6
490_1 67 years, female 523.5
491_1 89 years, female 519.0
466_1 57 years, female 488.7
286_1 68 years, female 444.3
375_1 74 years, female 401.6
81_1 67 years, male 397.5
217_1 76 years, male 396.5
162_1 79 years, female 394.5
32_1 67 years, male 392.5
396_1 62 years, male 387.4
149_1 88 years, male 385.0
499_1 55 years, female 375.2
246_1 77 years, male 370.3
414_1 84 years, female 369.7
142_1 61 years, female 363.5
229_1 69 years, female 361.9
89_1 63 years, male 353.9
376_1 75 years, female 352.0
501_1 88 years, male 346.4
265_1 87 years, male 341.2
117_1 61 years, male 336.7
153_1 70 years, female 334.9
313_1 79 years, female 334.2
480_1 63 years, male 328.9
251_1 78 years, male 320.1
137_1 83 years, male 314.2
354_1 81 years, female 313.4
318_1 68 years, male 303.2
404_1 82 years, female 302.7
495_1 57 years, female 300.5
319_1 81 years, male 300.1
468_1 89 years, male 298.0
517_1 88 years, male 295.2
405_1 91 years, male 293.6
120_1 70 years, female 290.8
99_1 64 years, male 290.3
335_1 73 years, female 290.3
266_1 85 years, male 289.3
177_1 74 years, male 285.4
243_1 75 years, male 283.5
35_1 74 years, female 283.3
42_1 85 years, male 274.7
315_1 62 years, female 274.5
145_1 84 years, male 273.8
389_1 86 years, female 271.5
109_1 81 years, female 270.8
526_1 61 years, male 270.4
355_1 70 years, female 269.8
352_1 62 years, male 261.7
350_1 84 years, female 260.1
394_1 75 years, female 257.5
291_1 76 years, male 256.5
237_1 82 years, male 256.4
311_1 78 years, male 255.5
119_1 70 years, female 253.7
320_1 89 years, female 253.6
189_1 76 years, male 253.0
254_1 77 years, female 251.5
324_1 76 years, male 249.1
322_1 76 years, male 248.8
163_1 78 years, male 248.2
172_1 72 years, female 247.6
264_1 73 years, female 247.4
379_1 60 years, male 244.7
386_1 76 years, male 240.5
316_1 62 years, male 234.8
9_1 66 years, female 234.0
447_1 81 years, male 233.8
43_1 64 years, female 232.9
218_1 71 years, female 232.0
317_1 60 years, male 230.3
518_1 75 years, female 229.2
18_1 88 years, male 228.2
6_1 73 years, female 227.5
349_1 83 years, male 226.4
347_1 72 years, male 223.4
307_1 66 years, female 222.9
425_1 59 years, female 222.2
308_1 70 years, female 217.5
351_1 91 years, male 213.6
2_1 77 years, female 212.0
295_1 61 years, female 204.8
115_1 83 years, male 201.1
384_1 83 years, male 197.9
288_1 66 years, female 195.0
139_1 64 years, female 187.7
356_1 87 years, female 186.1
293_1 68 years, female 185.6
41_1 94 years, female 178.6
377_1 82 years, female 178.0
321_1 62 years, female 176.8
17_1 71 years, male 176.3
506_1 65 years, male 172.2
406_1 79 years, male 171.7
503_1 68 years, male 171.3
314_1 67 years, male 167.9
353_1 82 years, female 167.5
173_1 67 years, male 157.1
452_1 88 years, female 150.5
126_1 63 years, male 145.6
348_1 84 years, male 136.0
292_1 71 years, male 130.6
4_1 88 years, female 104.7
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

61.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 61.0
FF:10030-101E3 24-65 years, mixed 61.0

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.1
Pig sample Sample description nTPM
Retina
nTPM: 143.1
Samples: 4

Max nTPM: 159.6
Min nTPM: 129.1
Sample A Female 143.7
Sample B Female 140.0
Sample C Male 129.1
Sample D Male 159.6

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.3
Mouse sample Sample description nTPM
Retina
nTPM: 53.3
Samples: 4

Max nTPM: 58.3
Min nTPM: 48.5
Sample A Male 48.5
Sample B Male 54.2
Sample C Female 52.3
Sample D Female 58.3

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