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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:192.5 nTPM
FANTOM5:57.7 Scaled Tags Per Million
Pig:112.9 nTPM
Mouse:94.1 nTPM
Allen mouse:9.9 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

192.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 166.8
2032 Female, age 42, unknown 207.3
2396 Male, age 61, right hemisphere 151.8
2497 Male, age 66, unknown 141.3
Centromedial thalamic nucleus
nTPM: 139.2
2401 Male, age 76, right hemisphere 243.1
2279 Female, age 85, left hemisphere 35.3
Habenula
nTPM: 192.5
1957 Male, age 80, both hemispheres 244.2
2203 Male, age 61, left hemisphere 204.3
2276 Male, age 66, unknown 187.0
2252 Male, age 62, unknown 134.5
Lateral geniculate body
nTPM: 191.2
2106 Female, age 67, right hemisphere 346.1
2399 Male, age 61, left hemisphere 254.0
1953 Male, age 62, unknown 252.8
2035 Female, age 72, unknown 243.1
2659 Male, age 66, unknown 122.7
2857 Male, age 74, right hemisphere 115.7
2841 Male, age 80, both hemispheres 115.1
2575 Female, age 94, right hemisphere 80.4
Lateral thalamic nuclei
nTPM: 138.8
1903 Male, age 76, left hemisphere 178.5
2577 Male, age 74, both hemispheres 162.0
2765 Female, age 67, both hemispheres 148.4
2573 Female, age 94, left hemisphere 104.3
2661 Female, age 72, unknown 100.8
Medial dorsal thalamic nucleus
nTPM: 169.7
2498 Male, age 66, unknown 241.0
1859 Male, age 76, both hemispheres 229.8
1971 Male, age 61, right hemisphere 215.2
2283 Male, age 80, right hemisphere 189.4
1810 Male, age 48, unknown 180.7
2026 Male, age 62, unknown 173.1
2492 Male, age 75, right hemisphere 167.5
2576 Male, age 74, both hemispheres 158.7
1930 Female, age 42, unknown 152.9
2402 Female, age 67, both hemispheres 137.3
2572 Female, age 94, right hemisphere 136.8
2039 Female, age 72, unknown 123.7
2660 Female, age 72, unknown 100.0
Medial geniculate body
nTPM: 122.1
1811 Female, age 42, unknown 185.8
2650 Female, age 94, left hemisphere 142.2
2207 Male, age 80, right hemisphere 134.4
2657 Male, age 74, right hemisphere 119.0
2217 Female, age 72, unknown 115.0
2571 Male, age 75, right hemisphere 88.0
2049 Male, age 76, both hemispheres 70.3
Nucleus reuniens
nTPM: 106.3
2212 Female, age 67, left hemisphere 186.9
2205 Male, age 80, left hemisphere 90.4
2210 Female, age 85, left hemisphere 41.5
Nucleus rhomboideus
nTPM: 113.2
2206 Male, age 80, both hemispheres 217.4
2213 Female, age 67, left hemisphere 77.7
2280 Female, age 85, left hemisphere 44.6
Posterior thalamic nucleus
nTPM: 136.5
2266 Male, age 76, right hemisphere 198.7
2655 Male, age 74, right hemisphere 122.7
2495 Female, age 67, right hemisphere 118.9
2649 Female, age 94, both hemispheres 105.7
Pulvinar
nTPM: 179.6
1972 Male, age 62, unknown 254.5
2398 Male, age 61, left hemisphere 233.6
1932 Male, age 80, right hemisphere 221.6
1899 Female, age 42, unknown 189.6
2214 Male, age 76, right hemisphere 182.6
1929 Male, age 48, unknown 167.8
2496 Female, age 67, right hemisphere 160.5
2582 Female, age 72, unknown 135.8
2499 Male, age 66, unknown 134.1
2724 Male, age 74, right hemisphere 116.4
Subthalamic nucleus
nTPM: 103.5
2406 Female, age 72, unknown 157.9
2275 Male, age 66, unknown 123.2
2658 Male, age 74, both hemispheres 115.6
2124 Male, age 62, unknown 105.6
2282 Male, age 61, both hemispheres 104.2
2779 Female, age 42, unknown 93.2
2056 Female, age 72, unknown 67.8
2216 Male, age 48, unknown 60.6
Ventral posterolateral thalamic nucleus
nTPM: 165.9
2740 Male, age 76, right hemisphere 250.1
2397 Male, age 61, right hemisphere 205.8
2197 Male, age 80, both hemispheres 173.5
2578 Male, age 74, both hemispheres 159.9
2570 Male, age 75, right hemisphere 103.5
2581 Female, age 72, unknown 102.4
Ventral posteromedial thalamic nucleus
nTPM: 160.4
2202 Male, age 61, left hemisphere 233.9
2653 Male, age 74, both hemispheres 174.9
2758 Male, age 80, both hemispheres 172.3
2127 Male, age 76, right hemisphere 118.6
2281 Male, age 75, right hemisphere 102.3
Ventral thalamic nuclei
nTPM: 145.5
1845 Male, age 48, unknown 218.2
1860 Male, age 76, both hemispheres 207.9
1912 Female, age 42, unknown 156.4
2204 Male, age 80, both hemispheres 133.9
2285 Male, age 62, unknown 132.2
2858 Female, age 72, unknown 121.1
2580 Male, age 66, unknown 119.7
2652 Male, age 74, left hemisphere 119.6
2291 Female, age 72, unknown 100.1
Zona incerta
nTPM: 94.0
2208 Male, age 80, right hemisphere 123.0
2663 Female, age 72, unknown 102.3
2215 Male, age 66, unknown 98.8
2822 Male, age 74, right hemisphere 88.4
2403 Male, age 62, unknown 57.7

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

57.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 57.7
FF:10154-103A1 76 years, female 57.7

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.9
Pig sample Sample description nTPM
Thalamus
nTPM: 112.9
Samples: 4

Max nTPM: 168.4
Min nTPM: 59.2
Sample A Female 144.2
Sample B Female 79.7
Sample C Male 168.4
Sample D Male 59.2

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.1
Mouse sample Sample description nTPM
Thalamus
nTPM: 94.1
Samples: 4

Max nTPM: 103.7
Min nTPM: 78.6
Sample A Male 78.6
Sample B Male 101.4
Sample C Female 92.6
Sample D Female 103.7

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.9
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 9.9
69526671 Antisense, RP_050421_01_D04, Mouse strain C57BL/6J (56 days, male) 12.3
77332100 Antisense, RP_070116_02_B01, Mouse strain C57BL/6J (56 days, male) 7.5

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