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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:212.4 nTPM
HPA Brain:336.6 nTPM
GTEx:212.4 nTPM
FANTOM5:1199.5 Scaled Tags Per Million
Pig:181.5 nTPM
Mouse:300.2 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

336.6
Sample id Sample description nTPM
Amygdala
nTPM: 336.6
2814 Male, age 76, right hemisphere 371.8
2514 Male, age 75, right hemisphere 351.5
2695 Female, age 67, right hemisphere 347.6
1987 Female, age 91, left hemisphere 314.5
2517 Female, age 94, left hemisphere 297.7
Basal amygdala
nTPM: 293.9
2609 Male, age 75, right hemisphere 371.3
2685 Female, age 94, left hemisphere 298.0
1955 Male, age 76, both hemispheres 285.3
2827 Female, age 67, right hemisphere 277.0
2110 Male, age 80, left hemisphere 267.0
2243 Female, age 91, right hemisphere 265.0
Central amygdala
nTPM: 312.4
2515 Male, age 75, right hemisphere 345.2
2826 Female, age 94, left hemisphere 324.3
1905 Male, age 76, both hemispheres 316.6
2701 Female, age 91, right hemisphere 303.3
2239 Male, age 80, left hemisphere 272.9
Corticomedial amygdala
nTPM: 281.2
2428 Male, age 75, right hemisphere 303.9
2242 Female, age 91, right hemisphere 303.8
2829 Male, age 80, left hemisphere 297.2
2240 Male, age 76, both hemispheres 279.5
2429 Female, age 94, left hemisphere 258.0
2535 Female, age 67, right hemisphere 244.5
Lateral amygdala
nTPM: 298.5
2516 Male, age 75, right hemisphere 325.5
1883 Male, age 76, both hemispheres 320.3
2255 Female, age 91, right hemisphere 311.9
2256 Male, age 80, left hemisphere 296.4
2830 Female, age 67, right hemisphere 274.2
2534 Female, age 94, left hemisphere 262.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

212.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 212.4
Samples: 152

Max nTPM: 392.3
Min nTPM: 146.9
Std nTPM: 37.0
Median nTPM: 202.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 392.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 323.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 307.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 297.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 292.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 292.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 289.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 285.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 279.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 279.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 273.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 272.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 271.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 268.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 267.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 265.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 263.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 260.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 254.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 252.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 250.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 250.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 249.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 249.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 246.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 246.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 244.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 241.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 240.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 237.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 233.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 233.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 233.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 233.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 232.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 232.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 231.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 230.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 230.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 228.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 228.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 228.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 227.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 225.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 225.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 225.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 223.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 223.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 220.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 219.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 219.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 218.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 218.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 218.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 217.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 216.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 216.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 216.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 215.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 215.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 215.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 213.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 212.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 212.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 212.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 211.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 210.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 210.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 210.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 209.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 207.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 207.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 207.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 205.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 203.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 203.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 201.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 201.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 201.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 201.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 201.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 200.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 200.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 200.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 200.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 199.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 198.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 198.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 197.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 197.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 197.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 197.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 197.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 197.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 196.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 196.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 196.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 195.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 195.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 193.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 193.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 192.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 191.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 191.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 191.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 191.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 189.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 188.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 188.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 188.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 187.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 185.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 185.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 185.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 185.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 184.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 183.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 183.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 183.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 182.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 181.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 181.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 181.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 181.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 179.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 178.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 178.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 178.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 178.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 177.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 177.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 176.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 175.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 175.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 175.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 175.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 175.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 173.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 173.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 172.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 172.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 172.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 171.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 170.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 169.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 169.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 168.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 162.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 162.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 157.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 154.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 146.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1199.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1199.5
FF:10151-102I7 76 years, female 1199.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.5
Pig sample Sample description nTPM
Amygdala
nTPM: 181.5
Samples: 4

Max nTPM: 217.6
Min nTPM: 162.0
Sample A Female 217.6
Sample B Female 182.3
Sample C Male 162.0
Sample D Male 163.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

300.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 300.2
Samples: 4

Max nTPM: 308.6
Min nTPM: 291.1
Sample A Male 303.9
Sample B Male 297.2
Sample C Female 308.6
Sample D Female 291.1

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