MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.1 nTPM
HPA Brain:41.3 nTPM
GTEx:16.1 nTPM
FANTOM5:51.2 Scaled Tags Per Million
Pig:73.8 nTPM
Mouse:109.0 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 41.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.4
2219 Male, age 76, both hemispheres 37.0
2019 Male, age 18, unknown 36.9
2411 Female, age 72, unknown 32.9
1827 Male, age 72, unknown 30.4
2666 Male, age 74, left hemisphere 30.4
1833 Male, age 53, unknown 28.6
1870 Female, age 42, unknown 26.7
1830 Male, age 51, unknown 25.6
2586 Male, age 75, left hemisphere 24.7
2828 Female, age 72, unknown 21.1
Dorsal raphe nucleus
nTPM: 31.6
2298 Female, age 72, unknown 34.9
1828 Male, age 53, unknown 34.6
2750 Male, age 76, both hemispheres 32.3
2047 Male, age 72, unknown 31.3
2016 Female, age 72, unknown 24.9
Inferior colliculus
nTPM: 27.1
2097 Female, age 72, unknown 32.9
1890 Male, age 53, unknown 27.3
1848 Female, age 42, unknown 26.4
2849 Male, age 72, unknown 21.8
Median raphe nucleus
nTPM: 37.0
2220 Male, age 76, midline 37.0
Periaquaductal grey, anterior
nTPM: 31.3
1947 Male, age 18, unknown 34.8
2502 Female, age 75, unknown 33.0
1795 Male, age 51, unknown 26.1
Periaquaductal grey, dorsal
nTPM: 24.6
2464 Female, age 72, unknown 26.2
1831 Male, age 72, unknown 25.3
1840 Male, age 53, unknown 24.8
2850 Male, age 76, both hemispheres 22.1
Periaquaductal grey, lateral
nTPM: 21.5
2272 Male, age 74, both hemispheres 25.5
2053 Male, age 18, unknown 20.1
2140 Male, age 76, both hemispheres 18.9
Pretectal area
nTPM: 31.0
1944 Female, age 72, unknown 42.7
1816 Male, age 51, unknown 39.9
2007 Male, age 72, unknown 39.8
1817 Female, age 42, unknown 38.5
1815 Male, age 53, unknown 33.5
2273 Male, age 74, both hemispheres 29.0
2224 Female, age 72, unknown 28.7
2667 Female, age 75, unknown 26.7
2407 Male, age 75, both hemispheres 23.1
2825 Male, age 18, unknown 20.7
2316 Male, age 76, right hemisphere 18.6
Red nucleus
nTPM: 27.1
1821 Female, age 72, unknown 37.3
2725 Female, age 75, unknown 29.8
2785 Male, age 18, unknown 29.4
1954 Female, age 42, unknown 29.1
1865 Male, age 51, unknown 26.0
2584 Male, age 75, left hemisphere 26.0
2227 Male, age 72, unknown 25.7
2503 Female, age 72, unknown 25.3
1904 Male, age 53, unknown 25.1
2588 Male, age 74, left hemisphere 24.1
2769 Male, age 72, unknown 23.9
2823 Male, age 76, right hemisphere 23.8
Substantia nigra
nTPM: 41.3
1916 Female, age 42, unknown 64.8
2241 Male, age 72, unknown 54.0
1941 Male, age 53, unknown 49.6
1851 Male, age 51, unknown 46.8
1889 Female, age 72, unknown 41.7
2409 Female, age 72, unknown 37.7
2699 Male, age 18, unknown 36.1
2665 Male, age 74, both hemispheres 30.0
2590 Female, age 75, unknown 26.6
2583 Male, age 75, right hemisphere 25.3
Superior colliculus
nTPM: 27.2
2668 Female, age 75, unknown 37.9
2087 Female, age 72, unknown 33.8
2261 Male, age 18, unknown 28.8
1895 Male, age 76, right hemisphere 28.6
2587 Male, age 74, left hemisphere 26.4
1839 Male, age 51, unknown 26.2
1796 Male, age 53, unknown 24.8
2664 Male, age 75, both hemispheres 23.2
1913 Female, age 42, unknown 22.2
1995 Male, age 72, unknown 19.6
Ventral tegmental area
nTPM: 33.4
2218 Male, age 76, both hemispheres 41.0
1915 Female, age 42, unknown 40.4
2410 Female, age 72, unknown 39.6
1942 Male, age 51, unknown 29.4
2223 Female, age 72, unknown 26.1
2021 Male, age 53, unknown 24.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.1
Samples: 139

Max nTPM: 44.0
Min nTPM: 7.0
Std nTPM: 6.7
Median nTPM: 14.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 44.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 37.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 34.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 31.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 30.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 29.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 28.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 28.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 27.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 27.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 27.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 51.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.2
FF:10158-103A5 76 years, female 51.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 73.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 68.9
Samples: 4

Max nTPM: 88.3
Min nTPM: 48.1
Sample A Female 88.3
Sample B Female 55.5
Sample C Male 83.6
Sample D Male 48.1
Midbrain
nTPM: 67.5
Samples: 4

Max nTPM: 78.6
Min nTPM: 46.9
Sample A Female 46.9
Sample B Female 68.2
Sample C Male 76.4
Sample D Male 78.6
Periaqueductal gray
nTPM: 62.7
Samples: 3

Max nTPM: 71.9
Min nTPM: 56.3
Sample B Female 59.8
Sample C Male 71.9
Sample D Male 56.3
Superior colliculi
nTPM: 73.8
Samples: 4

Max nTPM: 90.2
Min nTPM: 45.0
Sample A Female 90.2
Sample B Female 45.0
Sample C Male 85.7
Sample D Male 74.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 109.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 109.1
Samples: 4

Max nTPM: 112.1
Min nTPM: 107.0
Sample A Male 107.0
Sample B Male 112.1
Sample C Female 110.1
Sample D Female 107.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
532629 Antisense, RP_040810_02_G04, Mouse strain C57BL/6J (56 days, male) 3.9

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