MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.6 nTPM
HPA Brain:12.3 nTPM
GTEx:20.6 nTPM
FANTOM5:77.2 Scaled Tags Per Million
Mouse:0.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 12.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.3
1870 Female, age 42, unknown 10.2
2666 Male, age 74, left hemisphere 9.9
1830 Male, age 51, unknown 9.7
2019 Male, age 18, unknown 8.2
2828 Female, age 72, unknown 7.7
1833 Male, age 53, unknown 6.7
2586 Male, age 75, left hemisphere 5.9
1827 Male, age 72, unknown 5.6
2411 Female, age 72, unknown 5.2
2219 Male, age 76, both hemispheres 3.7
Dorsal raphe nucleus
nTPM: 11.4
2298 Female, age 72, unknown 14.3
2016 Female, age 72, unknown 14.2
1828 Male, age 53, unknown 11.6
2750 Male, age 76, both hemispheres 9.8
2047 Male, age 72, unknown 7.0
Inferior colliculus
nTPM: 7.3
2097 Female, age 72, unknown 8.2
1890 Male, age 53, unknown 7.8
2849 Male, age 72, unknown 6.6
1848 Female, age 42, unknown 6.5
Median raphe nucleus
nTPM: 12.3
2220 Male, age 76, midline 12.3
Periaquaductal grey, anterior
nTPM: 6.8
1795 Male, age 51, unknown 9.1
1947 Male, age 18, unknown 6.4
2502 Female, age 75, unknown 4.9
Periaquaductal grey, dorsal
nTPM: 10.2
1831 Male, age 72, unknown 14.4
2850 Male, age 76, both hemispheres 13.3
1840 Male, age 53, unknown 6.6
2464 Female, age 72, unknown 6.5
Periaquaductal grey, lateral
nTPM: 11.9
2272 Male, age 74, both hemispheres 12.9
2140 Male, age 76, both hemispheres 12.2
2053 Male, age 18, unknown 10.6
Pretectal area
nTPM: 8.9
2407 Male, age 75, both hemispheres 14.2
2316 Male, age 76, right hemisphere 13.0
2273 Male, age 74, both hemispheres 11.6
2224 Female, age 72, unknown 10.8
1944 Female, age 72, unknown 8.4
1817 Female, age 42, unknown 8.2
2007 Male, age 72, unknown 8.1
2825 Male, age 18, unknown 7.6
1815 Male, age 53, unknown 7.3
2667 Female, age 75, unknown 4.9
1816 Male, age 51, unknown 3.8
Red nucleus
nTPM: 8.4
2725 Female, age 75, unknown 12.7
1865 Male, age 51, unknown 11.9
2503 Female, age 72, unknown 9.8
2785 Male, age 18, unknown 8.3
2769 Male, age 72, unknown 8.1
2227 Male, age 72, unknown 8.0
2823 Male, age 76, right hemisphere 7.8
2584 Male, age 75, left hemisphere 7.4
1904 Male, age 53, unknown 7.1
1821 Female, age 72, unknown 6.9
1954 Female, age 42, unknown 6.3
2588 Male, age 74, left hemisphere 6.1
Substantia nigra
nTPM: 10.2
2699 Male, age 18, unknown 14.3
1941 Male, age 53, unknown 13.8
2590 Female, age 75, unknown 13.5
2665 Male, age 74, both hemispheres 12.4
2409 Female, age 72, unknown 10.7
2241 Male, age 72, unknown 9.2
1851 Male, age 51, unknown 8.8
2583 Male, age 75, right hemisphere 7.8
1916 Female, age 42, unknown 7.1
1889 Female, age 72, unknown 4.8
Superior colliculus
nTPM: 9.0
1913 Female, age 42, unknown 15.4
1995 Male, age 72, unknown 13.7
2587 Male, age 74, left hemisphere 12.1
2668 Female, age 75, unknown 8.6
2087 Female, age 72, unknown 8.3
1839 Male, age 51, unknown 7.7
1796 Male, age 53, unknown 6.9
2664 Male, age 75, both hemispheres 6.7
2261 Male, age 18, unknown 6.2
1895 Male, age 76, right hemisphere 4.6
Ventral tegmental area
nTPM: 11.7
2021 Male, age 53, unknown 16.7
2218 Male, age 76, both hemispheres 14.4
1915 Female, age 42, unknown 11.2
1942 Male, age 51, unknown 10.6
2223 Female, age 72, unknown 9.1
2410 Female, age 72, unknown 8.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.6
Samples: 139

Max nTPM: 146.5
Min nTPM: 1.1
Std nTPM: 25.6
Median nTPM: 10.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 146.5
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 116.9
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 116.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 111.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 100.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 86.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 85.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 67.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 67.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 66.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 60.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 77.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.2
FF:10158-103A5 76 years, female 77.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68410399 Antisense, RP_041214_01_G10, Mouse strain C57BL/6J (56 days, male) 0.2
75084134 Antisense, RP_060412_04_D09, Mouse strain C57BL/6J (56 days, male) 0.2
71570746 Antisense, RP_050512_01_E07, Mouse strain C57BL/6J (56 days, male) 0.1
68301228 Antisense, RP_041129_02_H03, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.1
68410399 Antisense, RP_041214_01_G10, Mouse strain C57BL/6J (56 days, male) 0.2
75084134 Antisense, RP_060412_04_D09, Mouse strain C57BL/6J (56 days, male) 0.2
71570746 Antisense, RP_050512_01_E07, Mouse strain C57BL/6J (56 days, male) 0.1
68301228 Antisense, RP_041129_02_H03, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.1
68410399 Antisense, RP_041214_01_G10, Mouse strain C57BL/6J (56 days, male) 0.2
75084134 Antisense, RP_060412_04_D09, Mouse strain C57BL/6J (56 days, male) 0.2
71570746 Antisense, RP_050512_01_E07, Mouse strain C57BL/6J (56 days, male) 0.1
68301228 Antisense, RP_041129_02_H03, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.1
68410399 Antisense, RP_041214_01_G10, Mouse strain C57BL/6J (56 days, male) 0.2
75084134 Antisense, RP_060412_04_D09, Mouse strain C57BL/6J (56 days, male) 0.2
71570746 Antisense, RP_050512_01_E07, Mouse strain C57BL/6J (56 days, male) 0.1
68301228 Antisense, RP_041129_02_H03, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.1
68410399 Antisense, RP_041214_01_G10, Mouse strain C57BL/6J (56 days, male) 0.2
75084134 Antisense, RP_060412_04_D09, Mouse strain C57BL/6J (56 days, male) 0.2
71570746 Antisense, RP_050512_01_E07, Mouse strain C57BL/6J (56 days, male) 0.1
68301228 Antisense, RP_041129_02_H03, Mouse strain C57BL/6J (56 days, male) 0.0

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