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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Medium
Goblet cells: Not detected
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:142.0 nTPM
HPA:63.4 nTPM
GTEx:142.0 nTPM
FANTOM5:0.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA049153Antibody HPA049554
Endocrine cells Not detected-
Enterocytes Not detected-
Enterocytes - Microvilli Medium-
Glandular cells -Not detected
Goblet cells Not detected-
Paneth cells Not detected-





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63.4
overview
Male, age 65
Small intestine sample 232
nTPM: 56
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 46.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 78.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 72.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

142.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 142.0
Samples: 187

Max nTPM: 700.2
Min nTPM: 1.0
Std nTPM: 107.1
Median nTPM: 125.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 700.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 613.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 497.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 474.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 436.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 417.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 390.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 381.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 367.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 363.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 361.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 308.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 303.0
GTEX-1192X-2526-SM-59868 50-59 years, male 295.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 292.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 290.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 289.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 288.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 274.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 269.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 265.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 255.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 249.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 247.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 242.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 225.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 225.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 224.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 210.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 202.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 201.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 201.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 200.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 195.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 194.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 193.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 193.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 190.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 185.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 185.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 184.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 184.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 184.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 180.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 177.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 177.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 177.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 176.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 175.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 174.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 170.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 170.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 168.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 165.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 164.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 163.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 160.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 158.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 157.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 156.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 156.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 156.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 155.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 153.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 152.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 151.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 151.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 149.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 149.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 149.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 148.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 148.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 146.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 146.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 145.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 144.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 144.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 144.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 141.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 139.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 138.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 137.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 136.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 135.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 135.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 134.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 133.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 132.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 130.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 130.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 128.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 127.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 125.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 125.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 123.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 119.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 118.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 118.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 114.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 114.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 113.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 111.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 110.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 108.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 107.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 107.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 107.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 106.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 104.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 104.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 103.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 102.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 102.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 101.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 101.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 101.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 101.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 100.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 99.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 95.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 95.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 95.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 95.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 94.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 94.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 92.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 92.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 92.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 91.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 90.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 90.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 89.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 86.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 86.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 81.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 80.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 77.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 75.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 71.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 70.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 70.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 68.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 67.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 66.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 64.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 62.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 62.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 61.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 61.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 56.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 56.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 56.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 55.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 55.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 53.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 51.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 48.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 47.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 44.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 44.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 43.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 42.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 41.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 39.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 38.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 38.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 37.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 36.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 33.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 33.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 32.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 32.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 31.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 30.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 29.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 27.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 17.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 15.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 12.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 11.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 11.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 10.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 9.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 9.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 8.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 5.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 0.0
FF:10024-101D6 15,40,85 years, mixed 0.0

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