We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
STMN3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • STMN3
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:275.3 nTPM
HPA Brain:382.4 nTPM
GTEx:275.3 nTPM
FANTOM5:470.8 Scaled Tags Per Million
Pig:187.5 nTPM
Mouse:741.3 nTPM
Allen mouse:15.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

382.4
Sample id Sample description nTPM
Amygdala
nTPM: 275.5
1987 Female, age 91, left hemisphere 322.4
2814 Male, age 76, right hemisphere 320.7
2517 Female, age 94, left hemisphere 317.8
2514 Male, age 75, right hemisphere 234.0
2695 Female, age 67, right hemisphere 182.3
Basal amygdala
nTPM: 382.4
2243 Female, age 91, right hemisphere 456.4
2685 Female, age 94, left hemisphere 455.1
2827 Female, age 67, right hemisphere 431.2
2110 Male, age 80, left hemisphere 355.9
2609 Male, age 75, right hemisphere 302.3
1955 Male, age 76, both hemispheres 293.5
Central amygdala
nTPM: 368.8
2826 Female, age 94, left hemisphere 479.2
2239 Male, age 80, left hemisphere 388.0
2701 Female, age 91, right hemisphere 342.5
2515 Male, age 75, right hemisphere 322.4
1905 Male, age 76, both hemispheres 311.8
Corticomedial amygdala
nTPM: 369.3
2535 Female, age 67, right hemisphere 493.5
2242 Female, age 91, right hemisphere 450.9
2829 Male, age 80, left hemisphere 408.1
2429 Female, age 94, left hemisphere 343.7
2428 Male, age 75, right hemisphere 274.2
2240 Male, age 76, both hemispheres 245.1
Lateral amygdala
nTPM: 352.6
2534 Female, age 94, left hemisphere 498.4
2255 Female, age 91, right hemisphere 384.2
2830 Female, age 67, right hemisphere 342.7
2256 Male, age 80, left hemisphere 341.7
1883 Male, age 76, both hemispheres 330.8
2516 Male, age 75, right hemisphere 217.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

275.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 275.3
Samples: 152

Max nTPM: 830.4
Min nTPM: 22.7
Std nTPM: 111.1
Median nTPM: 255.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 830.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 541.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 507.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 507.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 495.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 481.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 472.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 461.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 446.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 442.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 426.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 422.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 419.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 410.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 408.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 406.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 405.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 401.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 400.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 394.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 390.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 382.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 377.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 376.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 373.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 369.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 367.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 366.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 358.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 358.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 354.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 351.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 350.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 349.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 347.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 345.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 344.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 341.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 340.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 339.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 337.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 335.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 333.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 332.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 330.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 329.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 329.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 327.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 325.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 323.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 321.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 321.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 321.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 320.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 314.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 314.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 313.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 310.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 309.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 309.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 309.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 309.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 307.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 305.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 303.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 290.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 289.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 288.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 287.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 287.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 281.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 280.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 278.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 270.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 267.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 258.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 252.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 252.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 251.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 248.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 248.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 246.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 245.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 245.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 245.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 245.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 245.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 245.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 243.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 242.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 242.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 241.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 239.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 235.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 235.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 233.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 232.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 230.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 227.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 226.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 224.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 223.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 222.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 222.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 220.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 217.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 217.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 214.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 207.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 205.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 204.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 203.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 194.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 191.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 191.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 190.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 187.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 187.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 187.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 184.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 181.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 179.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 179.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 177.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 176.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 174.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 173.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 172.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 170.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 166.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 157.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 156.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 156.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 154.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 152.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 149.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 146.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 146.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 144.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 142.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 139.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 138.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 123.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 119.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 112.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 105.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 100.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 83.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 81.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 80.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 42.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 22.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

470.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 470.8
FF:10151-102I7 76 years, female 470.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

187.5
Pig sample Sample description nTPM
Amygdala
nTPM: 187.6
Samples: 4

Max nTPM: 283.6
Min nTPM: 139.7
Sample A Female 283.6
Sample B Female 139.7
Sample C Male 183.7
Sample D Male 143.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

741.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 741.3
Samples: 4

Max nTPM: 779.9
Min nTPM: 698.0
Sample A Male 768.0
Sample B Male 719.3
Sample C Female 779.9
Sample D Female 698.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.3
1004 Antisense, RP_Baylor_103022, Mouse strain C57BL/6J (56 days, male) 15.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org