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COL13A1
HPA
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  • SUMMARY

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  • COL13A1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

COL13A1
Synonyms
Gene descriptioni

Full gene name according to HGNC.

Collagen type XIII alpha 1 chain
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 10
Cytoband q22.1
Chromosome location (bp) 69801880 - 69964275
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

18
Ensembl ENSG00000197467 (version 109)
Entrez gene 1305
HGNC HGNC:2190
UniProt Q5TAT6 (UniProt - Evidence at protein level)
neXtProt NX_Q5TAT6
GeneCards COL13A1
Antibodypedia COL13A1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Involved in cell-matrix and cell-cell adhesion interactions that are required for normal development. May participate in the linkage between muscle fiber and basement membrane. May play a role in endochondral ossification of bone and branching morphogenesis of lung. Binds heparin. At neuromuscular junctions, may play a role in acetylcholine receptor clustering 1.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Developmental protein, Heparin-binding
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Cell adhesion, Differentiation, Osteogenesis
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes the alpha chain of one of the nonfibrillar collagens. The function of this gene product is not known, however, it has been detected at low levels in all connective tissue-producing cells so it may serve a general function in connective tissues. Unlike most of the collagens, which are secreted into the extracellular matrix, collagen XIII contains a transmembrane domain and the protein has been localized to the plasma membrane. The transcripts for this gene undergo complex and extensive splicing involving at least eight exons. Like other collagens, collagen XIII is a trimer; it is not known whether this trimer is composed of one or more than one alpha chain isomer. A number of alternatively spliced transcript variants have been described, but the full length nature of some of them has not been determined. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
COL13A1-201
ENSP00000346553
ENST00000354547
Q5TAT6
[Direct mapping] Collagen alpha-1(XIII) chain
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001501 [skeletal system development]
GO:0001503 [ossification]
GO:0001763 [morphogenesis of a branching structure]
GO:0001958 [endochondral ossification]
GO:0005201 [extracellular matrix structural constituent]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005581 [collagen trimer]
GO:0005600 [collagen type XIII trimer]
GO:0005615 [extracellular space]
GO:0005788 [endoplasmic reticulum lumen]
GO:0005886 [plasma membrane]
GO:0005911 [cell-cell junction]
GO:0007155 [cell adhesion]
GO:0007160 [cell-matrix adhesion]
GO:0008201 [heparin binding]
GO:0016020 [membrane]
GO:0030020 [extracellular matrix structural constituent conferring tensile strength]
GO:0030154 [cell differentiation]
GO:0030198 [extracellular matrix organization]
GO:0030199 [collagen fibril organization]
GO:0030903 [notochord development]
GO:0031012 [extracellular matrix]
GO:0045202 [synapse]
GO:0045211 [postsynaptic membrane]
GO:0062023 [collagen-containing extracellular matrix]
GO:0098609 [cell-cell adhesion]
Show all
695 aa
67.4 kDa
No 1
COL13A1-202
ENSP00000350463
ENST00000357811
A0A6E1W314
[Direct mapping] Collagen alpha-1(XIII) chain
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
684 aa
66.8 kDa
No 1
COL13A1-204
ENSP00000381947
ENST00000398975
H7BYT9
[Direct mapping] Collagen alpha-1(XIII) chain
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
Show all
247 aa
23.2 kDa
No 0
COL13A1-205
ENSP00000381949
ENST00000398978
Q5TAT6
[Direct mapping] Collagen alpha-1(XIII) chain
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001501 [skeletal system development]
GO:0001503 [ossification]
GO:0001763 [morphogenesis of a branching structure]
GO:0001958 [endochondral ossification]
GO:0005201 [extracellular matrix structural constituent]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005581 [collagen trimer]
GO:0005600 [collagen type XIII trimer]
GO:0005615 [extracellular space]
GO:0005788 [endoplasmic reticulum lumen]
GO:0005886 [plasma membrane]
GO:0005911 [cell-cell junction]
GO:0007155 [cell adhesion]
GO:0007160 [cell-matrix adhesion]
GO:0008201 [heparin binding]
GO:0016020 [membrane]
GO:0030020 [extracellular matrix structural constituent conferring tensile strength]
GO:0030154 [cell differentiation]
GO:0030198 [extracellular matrix organization]
GO:0030199 [collagen fibril organization]
GO:0030903 [notochord development]
GO:0031012 [extracellular matrix]
GO:0045202 [synapse]
GO:0045211 [postsynaptic membrane]
GO:0062023 [collagen-containing extracellular matrix]
GO:0098609 [cell-cell adhesion]
Show all
717 aa
69.9 kDa
No 1
COL13A1-206
ENSP00000388774
ENST00000456019
H7BZB6
[Direct mapping] Collagen alpha-1(XIII) chain
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
Show all
174 aa
16.4 kDa
No 0
COL13A1-210
ENSP00000430061
ENST00000517713
Q5TAT6
[Direct mapping] Collagen alpha-1(XIII) chain
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001501 [skeletal system development]
GO:0001503 [ossification]
GO:0001763 [morphogenesis of a branching structure]
GO:0001958 [endochondral ossification]
GO:0005201 [extracellular matrix structural constituent]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005581 [collagen trimer]
GO:0005600 [collagen type XIII trimer]
GO:0005615 [extracellular space]
GO:0005788 [endoplasmic reticulum lumen]
GO:0005886 [plasma membrane]
GO:0005911 [cell-cell junction]
GO:0007155 [cell adhesion]
GO:0007160 [cell-matrix adhesion]
GO:0008201 [heparin binding]
GO:0016020 [membrane]
GO:0030020 [extracellular matrix structural constituent conferring tensile strength]
GO:0030154 [cell differentiation]
GO:0030198 [extracellular matrix organization]
GO:0030199 [collagen fibril organization]
GO:0030903 [notochord development]
GO:0031012 [extracellular matrix]
GO:0045202 [synapse]
GO:0045211 [postsynaptic membrane]
GO:0062023 [collagen-containing extracellular matrix]
GO:0098609 [cell-cell adhesion]
Show all
668 aa
65 kDa
No 1
COL13A1-212
ENSP00000430173
ENST00000520133
Q5TAT6
[Direct mapping] Collagen alpha-1(XIII) chain
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001501 [skeletal system development]
GO:0001503 [ossification]
GO:0001763 [morphogenesis of a branching structure]
GO:0001958 [endochondral ossification]
GO:0005201 [extracellular matrix structural constituent]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005581 [collagen trimer]
GO:0005600 [collagen type XIII trimer]
GO:0005615 [extracellular space]
GO:0005788 [endoplasmic reticulum lumen]
GO:0005886 [plasma membrane]
GO:0005911 [cell-cell junction]
GO:0007155 [cell adhesion]
GO:0007160 [cell-matrix adhesion]
GO:0008201 [heparin binding]
GO:0016020 [membrane]
GO:0030020 [extracellular matrix structural constituent conferring tensile strength]
GO:0030154 [cell differentiation]
GO:0030198 [extracellular matrix organization]
GO:0030199 [collagen fibril organization]
GO:0030903 [notochord development]
GO:0031012 [extracellular matrix]
GO:0045202 [synapse]
GO:0045211 [postsynaptic membrane]
GO:0062023 [collagen-containing extracellular matrix]
GO:0098609 [cell-cell adhesion]
Show all
610 aa
59.5 kDa
No 1
COL13A1-213
ENSP00000428057
ENST00000520267
Q5TAT6
[Direct mapping] Collagen alpha-1(XIII) chain
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001501 [skeletal system development]
GO:0001503 [ossification]
GO:0001763 [morphogenesis of a branching structure]
GO:0001958 [endochondral ossification]
GO:0005201 [extracellular matrix structural constituent]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005581 [collagen trimer]
GO:0005600 [collagen type XIII trimer]
GO:0005615 [extracellular space]
GO:0005788 [endoplasmic reticulum lumen]
GO:0005886 [plasma membrane]
GO:0005911 [cell-cell junction]
GO:0007155 [cell adhesion]
GO:0007160 [cell-matrix adhesion]
GO:0008201 [heparin binding]
GO:0016020 [membrane]
GO:0030020 [extracellular matrix structural constituent conferring tensile strength]
GO:0030154 [cell differentiation]
GO:0030198 [extracellular matrix organization]
GO:0030199 [collagen fibril organization]
GO:0030903 [notochord development]
GO:0031012 [extracellular matrix]
GO:0045202 [synapse]
GO:0045211 [postsynaptic membrane]
GO:0062023 [collagen-containing extracellular matrix]
GO:0098609 [cell-cell adhesion]
Show all
645 aa
63 kDa
No 1
COL13A1-214
ENSP00000428342
ENST00000522165
Q5TAT6
[Direct mapping] Collagen alpha-1(XIII) chain
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001501 [skeletal system development]
GO:0001503 [ossification]
GO:0001763 [morphogenesis of a branching structure]
GO:0001958 [endochondral ossification]
GO:0005201 [extracellular matrix structural constituent]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005581 [collagen trimer]
GO:0005600 [collagen type XIII trimer]
GO:0005615 [extracellular space]
GO:0005788 [endoplasmic reticulum lumen]
GO:0005886 [plasma membrane]
GO:0005911 [cell-cell junction]
GO:0007155 [cell adhesion]
GO:0007160 [cell-matrix adhesion]
GO:0008201 [heparin binding]
GO:0016020 [membrane]
GO:0030020 [extracellular matrix structural constituent conferring tensile strength]
GO:0030154 [cell differentiation]
GO:0030198 [extracellular matrix organization]
GO:0030199 [collagen fibril organization]
GO:0030903 [notochord development]
GO:0031012 [extracellular matrix]
GO:0045202 [synapse]
GO:0045211 [postsynaptic membrane]
GO:0062023 [collagen-containing extracellular matrix]
GO:0098609 [cell-cell adhesion]
Show all
686 aa
66.9 kDa
No 1
COL13A1-215
ENSP00000496051
ENST00000645393
A0A2R8YGI3
[Direct mapping] Collagen alpha-1(XIII) chain
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001763 [morphogenesis of a branching structure]
GO:0001958 [endochondral ossification]
GO:0005911 [cell-cell junction]
Show all
728 aa
70.9 kDa
No 1
COL13A1-216
ENSP00000501050
ENST00000673628
A0A669KB28
[Direct mapping] Collagen alpha-1(XIII) chain
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
651 aa
63.7 kDa
No 1
COL13A1-217
ENSP00000501125
ENST00000673641
A0A669KB55
[Direct mapping] Collagen alpha-1(XIII) chain
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
663 aa
64.8 kDa
No 1
COL13A1-221
ENSP00000501247
ENST00000673768
A0A669KBF9
[Direct mapping] Collagen alpha-1(XIII) chain
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
Show all
178 aa
16.8 kDa
No 0
COL13A1-222
ENSP00000501147
ENST00000673802
A0A669KB79
[Direct mapping] Collagen alpha-1(XIII) chain
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
450 aa
44.6 kDa
No 1
COL13A1-224
ENSP00000501058
ENST00000673842
A0A669KAZ4
[Direct mapping] Collagen alpha-1(XIII) chain
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
658 aa
64.5 kDa
No 1
COL13A1-228
ENSP00000501097
ENST00000673931
A0A669KB25
[Direct mapping] Collagen alpha-1(XIII) chain
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
Show all
339 aa
32.1 kDa
No 0
COL13A1-230
ENSP00000501216
ENST00000673977
A0A669KBB8
[Direct mapping] Collagen alpha-1(XIII) chain
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
Show all
114 aa
10.8 kDa
No 0
COL13A1-234
ENSP00000501084
ENST00000674121
A0A669KB16
[Direct mapping] Collagen alpha-1(XIII) chain
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
628 aa
61.6 kDa
No 1

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