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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:59.8 nTPM
HPA Brain:80.6 nTPM
GTEx:59.8 nTPM
FANTOM5:107.5 Scaled Tags Per Million
Pig:145.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 71.5
2816 Male, age 47, midline 84.4
1981 Female, age 72, midline 80.5
2048 Male, age 55, midline 74.9
2194 Female, age 79, both hemispheres 69.5
2565 Male, age 75, midline 48.4
Cervical spinal cord, dorsal horn
nTPM: 80.6
2296 Male, age 66, both hemispheres 140.4
2173 Female, age 72, unknown 108.7
2069 Male, age 47, both hemispheres 73.5
1877 Male, age 55, unknown 67.4
2721 Male, age 90, both hemispheres 47.2
2297 Male, age 75, both hemispheres 46.1
Cervical spinal cord, ventral horn
nTPM: 77.9
2098 Female, age 72, unknown 96.5
2820 Female, age 79, both hemispheres 81.1
2068 Male, age 55, unknown 79.3
2480 Male, age 75, both hemispheres 74.6
2809 Male, age 90, both hemispheres 68.1
2295 Male, age 66, both hemispheres 67.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 59.8
Samples: 159

Max nTPM: 120.9
Min nTPM: 17.2
Std nTPM: 23.1
Median nTPM: 58.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 120.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 119.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 115.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 111.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 110.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 109.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 107.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 104.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 103.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 102.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 101.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 101.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 97.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 97.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 93.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 92.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 92.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 92.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 88.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 88.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 86.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 85.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 85.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 85.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 84.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 83.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 82.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 82.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 82.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 81.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 80.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 80.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 79.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 79.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 78.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 77.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 77.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 76.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 76.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 75.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 74.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 74.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 73.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 73.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 73.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 73.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 71.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 70.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 70.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 70.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 67.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 66.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 66.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 66.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 66.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 66.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 66.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 65.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 65.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 65.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 64.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 64.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 64.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 63.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 63.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 63.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 62.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 62.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 61.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 61.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 61.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 60.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 60.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 60.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 60.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 60.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 59.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 59.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 58.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 58.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 57.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 57.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 56.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 56.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 55.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 53.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 53.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 52.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 51.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 51.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 51.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 51.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 51.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 50.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 50.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 50.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 49.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 48.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 48.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 48.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 47.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 47.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 47.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 47.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 46.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 46.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 46.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 46.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 46.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 45.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 45.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 44.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 44.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 42.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 42.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 42.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 41.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 41.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 41.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 41.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 40.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 40.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 40.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 40.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 40.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 40.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 39.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 39.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 38.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 38.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 38.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 37.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 37.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 37.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 36.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 36.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 36.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 35.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 35.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 35.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 34.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 34.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 33.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 33.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 31.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 31.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 29.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 27.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 27.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 26.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 26.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 25.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 24.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 24.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 24.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 24.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 23.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 19.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 17.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

107.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 107.5
FF:10159-103A6 76 years, female 108.4
FF:10181-103D1 60 years, female 106.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 143.3
Samples: 4

Max nTPM: 177.1
Min nTPM: 114.3
Sample A Female 114.3
Sample B Female 177.1
Sample C Male 154.9
Sample D Male 127.0
Ventral spinal cord
nTPM: 145.0
Samples: 4

Max nTPM: 183.7
Min nTPM: 112.3
Sample A Female 135.4
Sample B Female 148.5
Sample C Male 112.3
Sample D Male 183.7

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