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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:539.4 nTPM
HPA Brain:69.0 nTPM
GTEx:539.4 nTPM
FANTOM5:13.2 Scaled Tags Per Million
Pig:2135.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 62.4
2565 Male, age 75, midline 86.8
2048 Male, age 55, midline 65.8
1981 Female, age 72, midline 59.7
2816 Male, age 47, midline 51.9
2194 Female, age 79, both hemispheres 48.0
Cervical spinal cord, dorsal horn
nTPM: 57.6
2173 Female, age 72, unknown 65.1
2721 Male, age 90, both hemispheres 65.0
2069 Male, age 47, both hemispheres 62.0
1877 Male, age 55, unknown 54.0
2296 Male, age 66, both hemispheres 52.7
2297 Male, age 75, both hemispheres 46.9
Cervical spinal cord, ventral horn
nTPM: 69.0
2480 Male, age 75, both hemispheres 119.4
2809 Male, age 90, both hemispheres 73.2
2068 Male, age 55, unknown 58.2
2098 Female, age 72, unknown 57.1
2295 Male, age 66, both hemispheres 56.9
2820 Female, age 79, both hemispheres 49.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

539.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 539.4
Samples: 159

Max nTPM: 1714.9
Min nTPM: 147.0
Std nTPM: 289.8
Median nTPM: 498.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1714.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1280.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1249.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1218.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1201.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1073.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1061.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1046.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1031.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1016.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1016.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 989.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 968.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 959.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 952.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 943.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 935.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 927.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 907.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 897.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 876.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 875.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 865.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 862.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 830.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 825.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 818.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 814.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 799.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 798.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 783.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 781.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 778.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 778.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 776.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 768.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 754.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 747.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 743.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 741.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 739.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 726.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 724.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 724.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 710.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 708.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 704.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 697.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 690.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 687.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 645.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 642.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 639.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 639.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 639.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 630.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 613.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 610.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 605.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 602.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 600.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 597.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 585.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 584.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 574.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 565.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 560.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 556.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 556.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 547.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 547.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 544.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 544.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 534.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 528.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 520.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 514.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 513.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 505.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 498.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 498.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 495.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 494.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 490.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 489.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 486.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 477.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 472.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 467.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 457.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 452.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 448.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 439.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 434.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 417.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 414.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 403.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 400.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 397.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 396.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 385.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 371.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 368.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 362.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 356.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 349.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 349.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 345.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 342.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 335.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 334.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 330.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 313.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 310.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 307.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 303.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 302.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 291.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 286.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 286.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 269.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 266.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 266.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 263.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 261.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 260.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 257.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 247.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 236.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 233.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 230.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 226.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 225.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 223.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 222.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 220.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 219.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 219.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 215.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 211.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 211.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 210.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 208.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 206.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 203.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 197.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 193.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 191.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 191.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 189.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 188.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 181.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 181.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 177.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 170.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 167.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 167.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 162.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 147.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

13.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 13.2
FF:10159-103A6 76 years, female 14.8
FF:10181-103D1 60 years, female 11.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2135.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 2135.5
Samples: 4

Max nTPM: 3250.4
Min nTPM: 1458.4
Sample A Female 1569.7
Sample B Female 2263.5
Sample C Male 3250.4
Sample D Male 1458.4
Ventral spinal cord
nTPM: 1978.3
Samples: 4

Max nTPM: 2411.2
Min nTPM: 1636.6
Sample A Female 1636.6
Sample B Female 2060.6
Sample C Male 2411.2
Sample D Male 1804.7

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