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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:241.1 nTPM
HPA:59.8 nTPM
GTEx:241.1 nTPM
FANTOM5:248.0 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.8
overview
Male, age 65
Small intestine sample 232
nTPM: 37.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 72.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 75.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 54.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

241.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 241.1
Samples: 187

Max nTPM: 1994.8
Min nTPM: 14.3
Std nTPM: 250.2
Median nTPM: 159.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1994.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1338.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1146.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 906.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 859.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 790.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 778.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 767.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 767.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 766.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 753.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 740.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 735.9
GTEX-1192X-2526-SM-59868 50-59 years, male 633.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 628.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 621.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 593.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 579.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 502.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 497.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 479.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 468.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 461.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 458.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 452.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 443.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 438.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 435.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 414.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 402.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 400.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 397.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 389.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 388.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 351.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 326.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 325.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 324.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 319.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 318.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 298.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 298.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 297.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 296.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 288.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 278.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 278.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 273.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 271.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 271.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 270.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 270.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 267.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 261.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 252.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 247.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 247.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 240.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 238.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 238.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 235.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 235.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 230.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 224.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 221.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 218.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 214.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 205.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 204.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 204.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 203.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 201.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 201.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 200.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 199.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 197.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 195.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 193.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 185.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 182.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 180.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 178.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 178.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 176.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 173.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 172.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 171.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 168.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 165.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 163.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 162.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 161.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 160.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 159.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 150.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 150.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 149.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 149.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 147.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 145.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 144.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 143.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 143.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 142.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 139.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 136.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 136.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 135.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 134.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 132.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 131.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 129.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 128.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 128.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 128.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 121.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 120.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 116.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 114.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 114.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 113.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 112.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 112.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 111.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 109.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 108.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 108.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 108.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 107.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 106.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 106.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 103.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 100.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 100.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 98.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 97.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 96.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 96.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 96.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 95.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 94.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 92.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 91.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 90.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 89.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 89.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 89.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 88.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 88.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 86.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 85.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 84.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 83.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 82.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 82.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 81.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 79.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 79.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 77.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 76.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 75.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 75.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 75.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 70.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 70.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 69.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 69.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 69.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 66.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 60.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 57.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 55.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 54.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 52.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 52.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 51.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 50.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 48.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 47.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 46.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 45.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 44.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 41.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 34.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 33.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 24.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 14.3
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

248.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 248.0
FF:10024-101D6 15,40,85 years, mixed 248.0

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