MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.1 nTPM
HPA Brain:143.3 nTPM
GTEx:21.1 nTPM
FANTOM5:196.4 Scaled Tags Per Million
Pig:135.6 nTPM
Mouse:86.3 nTPM
Allen mouse:6.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 143.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 120.1
2219 Male, age 76, both hemispheres 152.9
2411 Female, age 72, unknown 146.1
1833 Male, age 53, unknown 121.1
2019 Male, age 18, unknown 121.0
1870 Female, age 42, unknown 120.3
1827 Male, age 72, unknown 119.5
1830 Male, age 51, unknown 117.0
2666 Male, age 74, left hemisphere 111.4
2828 Female, age 72, unknown 98.0
2586 Male, age 75, left hemisphere 93.6
Dorsal raphe nucleus
nTPM: 113.3
2750 Male, age 76, both hemispheres 155.1
1828 Male, age 53, unknown 109.5
2047 Male, age 72, unknown 108.1
2298 Female, age 72, unknown 103.8
2016 Female, age 72, unknown 89.9
Inferior colliculus
nTPM: 114.3
2097 Female, age 72, unknown 122.3
1890 Male, age 53, unknown 116.8
1848 Female, age 42, unknown 109.5
2849 Male, age 72, unknown 108.5
Median raphe nucleus
nTPM: 143.3
2220 Male, age 76, midline 143.3
Periaquaductal grey, anterior
nTPM: 111.8
1947 Male, age 18, unknown 121.6
2502 Female, age 75, unknown 116.2
1795 Male, age 51, unknown 97.6
Periaquaductal grey, dorsal
nTPM: 95.7
1831 Male, age 72, unknown 108.0
2464 Female, age 72, unknown 104.0
1840 Male, age 53, unknown 94.1
2850 Male, age 76, both hemispheres 76.9
Periaquaductal grey, lateral
nTPM: 83.7
2053 Male, age 18, unknown 96.0
2272 Male, age 74, both hemispheres 83.2
2140 Male, age 76, both hemispheres 71.8
Pretectal area
nTPM: 120.4
1816 Male, age 51, unknown 162.8
2007 Male, age 72, unknown 148.7
1944 Female, age 72, unknown 147.8
1815 Male, age 53, unknown 143.4
1817 Female, age 42, unknown 141.5
2407 Male, age 75, both hemispheres 112.3
2825 Male, age 18, unknown 107.3
2316 Male, age 76, right hemisphere 99.8
2224 Female, age 72, unknown 96.4
2667 Female, age 75, unknown 92.7
2273 Male, age 74, both hemispheres 71.9
Red nucleus
nTPM: 130.4
1821 Female, age 72, unknown 149.7
2588 Male, age 74, left hemisphere 149.7
2503 Female, age 72, unknown 147.7
2823 Male, age 76, right hemisphere 146.4
2725 Female, age 75, unknown 134.1
1865 Male, age 51, unknown 128.3
2584 Male, age 75, left hemisphere 126.2
1904 Male, age 53, unknown 124.5
1954 Female, age 42, unknown 121.2
2785 Male, age 18, unknown 117.3
2227 Male, age 72, unknown 109.9
2769 Male, age 72, unknown 109.2
Substantia nigra
nTPM: 132.2
2241 Male, age 72, unknown 159.7
1941 Male, age 53, unknown 154.9
1889 Female, age 72, unknown 151.5
2409 Female, age 72, unknown 147.1
1916 Female, age 42, unknown 144.3
1851 Male, age 51, unknown 133.3
2590 Female, age 75, unknown 118.8
2583 Male, age 75, right hemisphere 115.2
2699 Male, age 18, unknown 108.5
2665 Male, age 74, both hemispheres 88.3
Superior colliculus
nTPM: 119.3
2668 Female, age 75, unknown 149.6
1895 Male, age 76, right hemisphere 144.8
2087 Female, age 72, unknown 142.3
2261 Male, age 18, unknown 131.7
1913 Female, age 42, unknown 120.0
2587 Male, age 74, left hemisphere 115.5
1796 Male, age 53, unknown 108.2
1839 Male, age 51, unknown 107.1
1995 Male, age 72, unknown 99.4
2664 Male, age 75, both hemispheres 74.2
Ventral tegmental area
nTPM: 122.5
2410 Female, age 72, unknown 150.8
2218 Male, age 76, both hemispheres 150.7
1915 Female, age 42, unknown 121.0
2223 Female, age 72, unknown 112.9
1942 Male, age 51, unknown 108.2
2021 Male, age 53, unknown 91.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.1
Samples: 139

Max nTPM: 65.2
Min nTPM: 4.6
Std nTPM: 10.1
Median nTPM: 19.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 65.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 52.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 51.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 47.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 44.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 41.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 36.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 36.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 36.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 36.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 35.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 196.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 196.4
FF:10158-103A5 76 years, female 196.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 135.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 128.1
Samples: 4

Max nTPM: 166.8
Min nTPM: 88.6
Sample A Female 157.2
Sample B Female 88.6
Sample C Male 166.8
Sample D Male 99.6
Midbrain
nTPM: 135.6
Samples: 4

Max nTPM: 185.6
Min nTPM: 97.2
Sample A Female 97.2
Sample B Female 125.8
Sample C Male 185.6
Sample D Male 133.9
Periaqueductal gray
nTPM: 105.9
Samples: 3

Max nTPM: 114.9
Min nTPM: 88.9
Sample B Female 114.9
Sample C Male 113.8
Sample D Male 88.9
Superior colliculi
nTPM: 133.7
Samples: 4

Max nTPM: 195.3
Min nTPM: 63.0
Sample A Female 133.9
Sample B Female 63.0
Sample C Male 195.3
Sample D Male 142.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 86.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 86.3
Samples: 4

Max nTPM: 93.8
Min nTPM: 73.4
Sample A Male 73.4
Sample B Male 90.9
Sample C Female 93.8
Sample D Female 87.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.8
74641219 Antisense, RP_060220_05_G09, Mouse strain C57BL/6J (56 days, male) 11.9
69134426 Antisense, RP_050321_02_H06, Mouse strain C57BL/6J (56 days, male) 5.5
71209892 Antisense, RP_050810_03_A05, Mouse strain C57BL/6J (56 days, male) 3.0

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