MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.5 nTPM
HPA Brain:203.0 nTPM
GTEx:1.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 203.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 171.3
2666 Male, age 74, left hemisphere 229.1
1830 Male, age 51, unknown 195.2
2219 Male, age 76, both hemispheres 189.4
1833 Male, age 53, unknown 178.5
2019 Male, age 18, unknown 170.7
2828 Female, age 72, unknown 170.1
2411 Female, age 72, unknown 150.8
1827 Male, age 72, unknown 149.9
2586 Male, age 75, left hemisphere 144.7
1870 Female, age 42, unknown 134.4
Dorsal raphe nucleus
nTPM: 147.3
2047 Male, age 72, unknown 179.4
2750 Male, age 76, both hemispheres 172.9
2016 Female, age 72, unknown 141.5
1828 Male, age 53, unknown 140.1
2298 Female, age 72, unknown 102.6
Inferior colliculus
nTPM: 155.5
2849 Male, age 72, unknown 169.3
1890 Male, age 53, unknown 168.5
1848 Female, age 42, unknown 154.5
2097 Female, age 72, unknown 129.6
Median raphe nucleus
nTPM: 203.0
2220 Male, age 76, midline 203.0
Periaquaductal grey, anterior
nTPM: 131.5
1947 Male, age 18, unknown 147.7
1795 Male, age 51, unknown 130.1
2502 Female, age 75, unknown 116.6
Periaquaductal grey, dorsal
nTPM: 149.9
2464 Female, age 72, unknown 161.9
2850 Male, age 76, both hemispheres 158.9
1831 Male, age 72, unknown 149.1
1840 Male, age 53, unknown 129.7
Periaquaductal grey, lateral
nTPM: 150.5
2140 Male, age 76, both hemispheres 175.3
2053 Male, age 18, unknown 147.2
2272 Male, age 74, both hemispheres 129.1
Pretectal area
nTPM: 143.5
2316 Male, age 76, right hemisphere 192.6
2407 Male, age 75, both hemispheres 164.8
1944 Female, age 72, unknown 151.5
2667 Female, age 75, unknown 150.2
2825 Male, age 18, unknown 146.3
1815 Male, age 53, unknown 139.7
2224 Female, age 72, unknown 137.1
2007 Male, age 72, unknown 134.3
1816 Male, age 51, unknown 130.7
1817 Female, age 42, unknown 123.3
2273 Male, age 74, both hemispheres 107.7
Red nucleus
nTPM: 168.2
2588 Male, age 74, left hemisphere 235.2
2823 Male, age 76, right hemisphere 217.0
2584 Male, age 75, left hemisphere 179.8
1865 Male, age 51, unknown 174.5
1904 Male, age 53, unknown 172.6
2769 Male, age 72, unknown 162.3
2785 Male, age 18, unknown 158.6
2227 Male, age 72, unknown 156.8
1954 Female, age 42, unknown 154.4
2503 Female, age 72, unknown 143.6
2725 Female, age 75, unknown 142.2
1821 Female, age 72, unknown 121.0
Substantia nigra
nTPM: 153.0
2665 Male, age 74, both hemispheres 180.4
1941 Male, age 53, unknown 166.3
2241 Male, age 72, unknown 166.1
2583 Male, age 75, right hemisphere 165.7
2590 Female, age 75, unknown 153.1
2699 Male, age 18, unknown 149.7
2409 Female, age 72, unknown 148.6
1889 Female, age 72, unknown 142.9
1851 Male, age 51, unknown 133.5
1916 Female, age 42, unknown 123.4
Superior colliculus
nTPM: 153.8
2668 Female, age 75, unknown 187.5
2087 Female, age 72, unknown 173.7
1913 Female, age 42, unknown 163.3
1895 Male, age 76, right hemisphere 161.7
2587 Male, age 74, left hemisphere 153.0
2664 Male, age 75, both hemispheres 152.0
1839 Male, age 51, unknown 146.5
2261 Male, age 18, unknown 140.3
1995 Male, age 72, unknown 132.6
1796 Male, age 53, unknown 127.0
Ventral tegmental area
nTPM: 154.0
2021 Male, age 53, unknown 169.4
2223 Female, age 72, unknown 169.0
2218 Male, age 76, both hemispheres 165.2
1942 Male, age 51, unknown 163.4
2410 Female, age 72, unknown 131.1
1915 Female, age 42, unknown 126.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.5
Samples: 139

Max nTPM: 6.0
Min nTPM: 0.0
Std nTPM: 0.9
Median nTPM: 1.4
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 6.0
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 4.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 3.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 3.8
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 3.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 3.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 3.7
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 3.4
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 3.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 2.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 2.8
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