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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:58.0 nTPM
HPA Brain:134.7 nTPM
GTEx:58.0 nTPM
FANTOM5:205.8 Scaled Tags Per Million
Pig:83.6 nTPM
Mouse:83.4 nTPM
Allen mouse:10.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.7
Sample id Sample description nTPM
Amygdala
nTPM: 128.5
2514 Male, age 75, right hemisphere 148.2
2695 Female, age 67, right hemisphere 132.3
1987 Female, age 91, left hemisphere 127.4
2517 Female, age 94, left hemisphere 120.6
2814 Male, age 76, right hemisphere 113.9
Basal amygdala
nTPM: 126.4
2609 Male, age 75, right hemisphere 137.4
2110 Male, age 80, left hemisphere 134.0
2243 Female, age 91, right hemisphere 132.0
2685 Female, age 94, left hemisphere 125.6
1955 Male, age 76, both hemispheres 117.9
2827 Female, age 67, right hemisphere 111.4
Central amygdala
nTPM: 123.1
2515 Male, age 75, right hemisphere 132.4
2239 Male, age 80, left hemisphere 127.4
2701 Female, age 91, right hemisphere 125.4
2826 Female, age 94, left hemisphere 119.6
1905 Male, age 76, both hemispheres 110.8
Corticomedial amygdala
nTPM: 134.7
2428 Male, age 75, right hemisphere 152.6
2242 Female, age 91, right hemisphere 140.7
2829 Male, age 80, left hemisphere 139.3
2429 Female, age 94, left hemisphere 130.5
2240 Male, age 76, both hemispheres 125.6
2535 Female, age 67, right hemisphere 119.8
Lateral amygdala
nTPM: 115.2
2516 Male, age 75, right hemisphere 133.8
1883 Male, age 76, both hemispheres 119.4
2830 Female, age 67, right hemisphere 115.1
2255 Female, age 91, right hemisphere 114.1
2534 Female, age 94, left hemisphere 105.2
2256 Male, age 80, left hemisphere 103.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 58.0
Samples: 152

Max nTPM: 103.8
Min nTPM: 35.6
Std nTPM: 12.2
Median nTPM: 56.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 103.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 95.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 93.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 87.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 87.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 86.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 86.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 82.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 82.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 81.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 81.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 78.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 77.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 75.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 75.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 74.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 73.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 73.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 73.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 73.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 72.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 70.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 69.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 69.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 69.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 68.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 68.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 67.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 67.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 66.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 66.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 65.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 65.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 65.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 65.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 64.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 64.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 63.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 63.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 63.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 62.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 62.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 62.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 61.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 61.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 61.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 60.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 60.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 59.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 59.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 59.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 59.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 59.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 58.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 58.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 58.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 58.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 58.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 58.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 57.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 57.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 57.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 57.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 57.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 57.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 57.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 57.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 56.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 56.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 56.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 56.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 56.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 56.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 56.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 56.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 56.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 55.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 55.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 55.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 54.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 54.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 54.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 53.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 53.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 53.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 53.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 53.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 53.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 53.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 53.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 53.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 53.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 53.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 53.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 53.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 52.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 52.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 52.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 52.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 52.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 52.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 52.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 52.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 52.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 52.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 51.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 51.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 51.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 50.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 50.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 50.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 50.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 50.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 49.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 49.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 49.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 49.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 49.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 49.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 49.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 48.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 48.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 48.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 48.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 48.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 48.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 48.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 48.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 48.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 48.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 47.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 46.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 46.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 45.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 45.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 45.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 45.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 44.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 44.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 44.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 44.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 43.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 43.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 42.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 41.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 41.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 40.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 39.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 38.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 37.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 35.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 35.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

205.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 205.8
FF:10151-102I7 76 years, female 205.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

83.6
Pig sample Sample description nTPM
Amygdala
nTPM: 83.6
Samples: 4

Max nTPM: 98.0
Min nTPM: 72.9
Sample A Female 98.0
Sample B Female 78.7
Sample C Male 72.9
Sample D Male 84.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

83.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 83.4
Samples: 4

Max nTPM: 88.2
Min nTPM: 76.7
Sample A Male 86.3
Sample B Male 82.5
Sample C Female 76.7
Sample D Female 88.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.3
74821970 Antisense, RP_060321_02_F08, Mouse strain C57BL/6J (56 days, male) 10.3

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