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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:191.3 nTPM
FANTOM5:105.9 Scaled Tags Per Million

THALAMUS - Annotated protein expression
Pending normal tissue analysis

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

191.3
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 64.3
2497 Male, age 66, unknown 93.8
2032 Female, age 42, unknown 73.9
2396 Male, age 61, right hemisphere 25.2
Centromedial thalamic nucleus
nTPM: 74.9
2401 Male, age 76, right hemisphere 83.2
2279 Female, age 85, left hemisphere 66.5
Habenula
nTPM: 153.5
2203 Male, age 61, left hemisphere 171.6
2276 Male, age 66, unknown 160.1
2252 Male, age 62, unknown 147.6
1957 Male, age 80, both hemispheres 134.7
Lateral geniculate body
nTPM: 120.5
2857 Male, age 74, right hemisphere 185.9
2035 Female, age 72, unknown 134.3
2575 Female, age 94, right hemisphere 124.3
2106 Female, age 67, right hemisphere 121.2
2399 Male, age 61, left hemisphere 119.9
2841 Male, age 80, both hemispheres 115.1
2659 Male, age 66, unknown 98.3
1953 Male, age 62, unknown 64.9
Lateral thalamic nuclei
nTPM: 121.1
1903 Male, age 76, left hemisphere 148.6
2573 Female, age 94, left hemisphere 146.8
2661 Female, age 72, unknown 136.3
2765 Female, age 67, both hemispheres 88.1
2577 Male, age 74, both hemispheres 85.6
Medial dorsal thalamic nucleus
nTPM: 147.2
2572 Female, age 94, right hemisphere 245.3
1810 Male, age 48, unknown 203.9
2492 Male, age 75, right hemisphere 194.7
2576 Male, age 74, both hemispheres 162.1
2498 Male, age 66, unknown 160.5
2402 Female, age 67, both hemispheres 154.3
2283 Male, age 80, right hemisphere 137.7
2026 Male, age 62, unknown 137.3
2039 Female, age 72, unknown 124.5
1859 Male, age 76, both hemispheres 109.2
1930 Female, age 42, unknown 109.0
1971 Male, age 61, right hemisphere 92.7
2660 Female, age 72, unknown 82.3
Medial geniculate body
nTPM: 157.2
2657 Male, age 74, right hemisphere 189.9
2049 Male, age 76, both hemispheres 189.2
2650 Female, age 94, left hemisphere 185.7
2571 Male, age 75, right hemisphere 168.2
2207 Male, age 80, right hemisphere 150.0
2217 Female, age 72, unknown 115.1
1811 Female, age 42, unknown 102.1
Nucleus reuniens
nTPM: 74.4
2205 Male, age 80, left hemisphere 91.6
2212 Female, age 67, left hemisphere 73.7
2210 Female, age 85, left hemisphere 57.9
Nucleus rhomboideus
nTPM: 110.5
2206 Male, age 80, both hemispheres 157.3
2213 Female, age 67, left hemisphere 103.1
2280 Female, age 85, left hemisphere 71.1
Posterior thalamic nucleus
nTPM: 191.3
2649 Female, age 94, both hemispheres 252.8
2655 Male, age 74, right hemisphere 199.6
2495 Female, age 67, right hemisphere 166.1
2266 Male, age 76, right hemisphere 146.7
Pulvinar
nTPM: 121.5
2724 Male, age 74, right hemisphere 189.0
2582 Female, age 72, unknown 161.6
2496 Female, age 67, right hemisphere 152.1
1932 Male, age 80, right hemisphere 135.6
2499 Male, age 66, unknown 133.8
2214 Male, age 76, right hemisphere 106.4
1929 Male, age 48, unknown 92.0
2398 Male, age 61, left hemisphere 87.5
1972 Male, age 62, unknown 78.9
1899 Female, age 42, unknown 77.7
Subthalamic nucleus
nTPM: 87.5
2282 Male, age 61, both hemispheres 142.8
2216 Male, age 48, unknown 102.1
2275 Male, age 66, unknown 86.4
2056 Female, age 72, unknown 85.9
2779 Female, age 42, unknown 81.0
2124 Male, age 62, unknown 74.6
2658 Male, age 74, both hemispheres 72.7
2406 Female, age 72, unknown 54.5
Ventral posterolateral thalamic nucleus
nTPM: 115.2
2570 Male, age 75, right hemisphere 205.6
2197 Male, age 80, both hemispheres 137.6
2397 Male, age 61, right hemisphere 104.1
2740 Male, age 76, right hemisphere 91.9
2581 Female, age 72, unknown 79.8
2578 Male, age 74, both hemispheres 72.5
Ventral posteromedial thalamic nucleus
nTPM: 121.5
2281 Male, age 75, right hemisphere 182.4
2758 Male, age 80, both hemispheres 135.2
2127 Male, age 76, right hemisphere 114.6
2653 Male, age 74, both hemispheres 102.5
2202 Male, age 61, left hemisphere 72.9
Ventral thalamic nuclei
nTPM: 105.6
2204 Male, age 80, both hemispheres 143.1
1860 Male, age 76, both hemispheres 134.4
2285 Male, age 62, unknown 118.8
2580 Male, age 66, unknown 109.0
2291 Female, age 72, unknown 98.3
1912 Female, age 42, unknown 98.2
2858 Female, age 72, unknown 87.2
2652 Male, age 74, left hemisphere 87.1
1845 Male, age 48, unknown 74.3
Zona incerta
nTPM: 81.1
2208 Male, age 80, right hemisphere 151.4
2663 Female, age 72, unknown 74.6
2403 Male, age 62, unknown 67.8
2215 Male, age 66, unknown 57.7
2822 Male, age 74, right hemisphere 53.8

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

105.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 105.9
FF:10154-103A1 76 years, female 105.9

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